Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMP38_RS08770 Genome accession   NZ_CP062895
Coordinates   1853516..1854940 (-) Length   474 a.a.
NCBI ID   WP_000132558.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Lact-ER02-39     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1848516..1859940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP38_RS08740 (IMP38_08750) yeeZ 1848571..1849395 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  IMP38_RS08745 (IMP38_08755) yeeY 1849441..1850370 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IMP38_RS08750 (IMP38_08760) yoeI 1850585..1850647 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMP38_RS08755 (IMP38_08765) plaP 1850637..1851995 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMP38_RS08760 (IMP38_08770) tsuA 1852174..1853232 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  IMP38_RS08765 (IMP38_08775) tsuB 1853246..1853473 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMP38_RS08770 (IMP38_08780) sbcB 1853516..1854940 (-) 1425 WP_000132558.1 exodeoxyribonuclease I Machinery gene
  IMP38_RS08775 (IMP38_08785) - 1855122..1856315 (+) 1194 WP_353047156.1 integrase family protein -
  IMP38_RS08780 (IMP38_08790) - 1856275..1856553 (-) 279 WP_195686568.1 hypothetical protein -
  IMP38_RS08785 (IMP38_08795) - 1856556..1856864 (-) 309 WP_000216180.1 hypothetical protein -
  IMP38_RS08790 (IMP38_08800) - 1857219..1857878 (-) 660 WP_179077806.1 LexA family transcriptional regulator -
  IMP38_RS08795 (IMP38_08805) - 1857990..1858205 (+) 216 WP_000067727.1 helix-turn-helix transcriptional regulator -
  IMP38_RS08800 (IMP38_08810) - 1858416..1858649 (+) 234 Protein_1739 DNA transfer protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54355.59 Da        Isoelectric Point: 5.3476

>NTDB_id=435506 IMP38_RS08770 WP_000132558.1 1853516..1854940(-) (sbcB) [Escherichia coli strain Res13-Lact-ER02-39]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=435506 IMP38_RS08770 WP_000132558.1 1853516..1854940(-) (sbcB) [Escherichia coli strain Res13-Lact-ER02-39]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586