Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HFD80_RS10440 Genome accession   NZ_CP050907
Coordinates   2193169..2193549 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DT-Ab022     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2188169..2198549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD80_RS10410 (HFD80_10410) tadA 2188287..2188790 (-) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -
  HFD80_RS10415 (HFD80_10415) - 2188797..2189921 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  HFD80_RS10420 (HFD80_10420) ung 2189918..2190631 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  HFD80_RS10425 (HFD80_10425) - 2190682..2191278 (-) 597 WP_000908452.1 6-pyruvoyl trahydropterin synthase family protein -
  HFD80_RS10430 (HFD80_10430) gspK 2191509..2192468 (-) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  HFD80_RS10435 (HFD80_10435) xcpW 2192468..2193169 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HFD80_RS10440 (HFD80_10440) xcpV 2193169..2193549 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  HFD80_RS10445 (HFD80_10445) - 2193539..2194093 (-) 555 WP_000841373.1 type II secretion system protein -
  HFD80_RS10450 (HFD80_10450) - 2194103..2194711 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  HFD80_RS10455 (HFD80_10455) - 2194749..2195522 (-) 774 WP_000497298.1 TatD family hydrolase -
  HFD80_RS10460 (HFD80_10460) - 2195540..2195881 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  HFD80_RS10465 (HFD80_10465) - 2195893..2196873 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  HFD80_RS10470 (HFD80_10470) kdsB 2196885..2197646 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=435472 HFD80_RS10440 WP_000836911.1 2193169..2193549(-) (xcpV) [Acinetobacter baumannii strain DT-Ab022]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=435472 HFD80_RS10440 WP_000836911.1 2193169..2193549(-) (xcpV) [Acinetobacter baumannii strain DT-Ab022]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1