Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMP41_RS08370 Genome accession   NZ_CP062889
Coordinates   1765574..1767001 (-) Length   475 a.a.
NCBI ID   WP_001471732.1    Uniprot ID   -
Organism   Escherichia coli O100:H21 strain Res13-Lact-ER07-18     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1760574..1772001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP41_RS08335 (IMP41_08330) hisL 1761158..1761208 (-) 51 WP_001364200.1 his operon leader peptide -
  IMP41_RS08340 (IMP41_08335) yefM 1761491..1761742 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  IMP41_RS08345 (IMP41_08340) yoeB 1761739..1761993 (+) 255 WP_001471733.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  IMP41_RS08350 (IMP41_08345) yeeZ 1762076..1762900 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IMP41_RS08355 (IMP41_08350) yeeY 1762946..1763875 (+) 930 WP_001374016.1 LysR substrate-binding domain-containing protein -
  IMP41_RS08360 (IMP41_08355) yoeI 1764090..1764152 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMP41_RS08365 (IMP41_08360) plaP 1764142..1765500 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMP41_RS08370 (IMP41_08365) sbcB 1765574..1767001 (-) 1428 WP_001471732.1 exodeoxyribonuclease I Machinery gene
  IMP41_RS08375 (IMP41_08370) dacD 1767210..1768376 (+) 1167 WP_001374019.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMP41_RS08380 (IMP41_08375) sbmC 1768495..1768968 (+) 474 WP_001471730.1 DNA gyrase inhibitor SbmC -
  IMP41_RS08385 (IMP41_08380) yeeA 1769166..1770224 (+) 1059 WP_001200890.1 FUSC family protein -
  IMP41_RS08390 (IMP41_08385) tmaR 1770396..1770725 (+) 330 WP_001374017.1 DUF496 family protein -
  IMP41_RS08395 (IMP41_08390) - 1770826..1771011 (-) 186 Protein_1652 EutP/PduV family microcompartment system protein -
  IMP41_RS08400 (IMP41_08395) - 1771062..1771208 (+) 147 Protein_1653 transposase domain-containing protein -
  IMP41_RS08405 (IMP41_08400) - 1771497..1771577 (-) 81 Protein_1654 hypothetical protein -
  IMP41_RS08410 (IMP41_08405) yeeW 1771623..1771817 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54497.81 Da        Isoelectric Point: 5.4700

>NTDB_id=435424 IMP41_RS08370 WP_001471732.1 1765574..1767001(-) (sbcB) [Escherichia coli O100:H21 strain Res13-Lact-ER07-18]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=435424 IMP41_RS08370 WP_001471732.1 1765574..1767001(-) (sbcB) [Escherichia coli O100:H21 strain Res13-Lact-ER07-18]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581