Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SMUGS5_RS06710 Genome accession   NC_018089
Coordinates   1415853..1419095 (-) Length   1080 a.a.
NCBI ID   WP_002279838.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1410853..1424095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS06700 (SMUGS5_06690) lacR 1411246..1412001 (-) 756 WP_002265225.1 transcriptional regulator LacR -
  SMUGS5_RS06705 (SMUGS5_06695) rexA 1412225..1415863 (-) 3639 WP_014835007.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SMUGS5_RS06710 (SMUGS5_06700) rexB 1415853..1419095 (-) 3243 WP_002279838.1 ATP-dependent nuclease subunit B Machinery gene
  SMUGS5_RS06715 (SMUGS5_06705) cas2e 1420664..1421566 (-) 903 WP_002268127.1 type I-E CRISPR-associated endoribonuclease Cas2e -
  SMUGS5_RS06720 (SMUGS5_06710) cas1e 1421568..1422509 (-) 942 WP_002268884.1 type I-E CRISPR-associated endonuclease Cas1e -
  SMUGS5_RS06725 (SMUGS5_06715) cas6e 1422511..1423158 (-) 648 WP_002268883.1 type I-E CRISPR-associated protein Cas6/Cse3/CasE -
  SMUGS5_RS06730 (SMUGS5_06720) cas5e 1423158..1423874 (-) 717 WP_002268124.1 type I-E CRISPR-associated protein Cas5/CasD -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 123917.89 Da        Isoelectric Point: 5.7352

>NTDB_id=43542 SMUGS5_RS06710 WP_002279838.1 1415853..1419095(-) (rexB) [Streptococcus mutans GS-5]
MKLLYTDIPYNITEILAEEAQIAAKAGKRVFYIAPNSLSFEKERAVLETLPERASFAITITRFEQMARYFVLNDIHQGET
IDDNGLAMVFYRALSSFSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELNQLNSAEKQEDLIKIFTEVETILSA
GHFDNQSKIAFFAQQIKFGHLDTALQDLTIVVDGFTRFSAEEENLIGLLYEKGVDIIIGTYISQKAYRSTFSNENVYQAS
LDFIRGLAGKFQTKPEYVVSKQEALPAFTKLSQLFESCHDFSDSQLVLTDKDKEHVTIWDVINQKEEVEHVAKSIRRKLY
EGHRYKDILVLLGDADAYKLQIGKIFDKYEIPYYFGKAESMSSHPLVHFVDSLERVKRYNFRAEDVMNLLKSGLYGKIRQ
NQLDKLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELIKIQAQKGDSILQKLTNFLEAISLTNNF
SKLIQGVSDTEQEKNEQVWKTFTVILEQFHTIFGQEKMKLADFLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNK
FVFALGMTQSHFPKIVQNKSLISDEERAKINEATPDNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDN
TSSYLLELQDMGVPVVEKGGNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSVAVRYLRQKLAKEGLTIPE
VNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLYFLQYILGLQELETIHPDARNHGTYLHRVFELVMQDQST
DDFDSKLNRAIDITNHEDSFHLVYNEDEESRYALGILEDIARSTATILKGDNPVQVESEEEAFELMLDQTVKIRGVIDRI
DRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALRSCKNLNDTDKIFGAMYLHMQEPKTDLANMKSIEKIPETV
HKNLSYKGLFLEDEKAHLANGKYHLHDAVYSQKEVDLLLDYNKRLYRSAAKQIRKGNFLINPYSQDGKSVQGEQLKAITH
FEADRHMPYARKLYQLPRKEKRQGFLALMQSKKEEEGNDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=43542 SMUGS5_RS06710 WP_002279838.1 1415853..1419095(-) (rexB) [Streptococcus mutans GS-5]
ATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGG
TAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGG
CTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACGCTATTTTGTTTTAAATGATATTCATCAGGGCGAAACC
ATTGATGATAATGGACTTGCCATGGTTTTTTATCGTGCTTTATCCAGTTTTTCAGACCAAGATTTGCGTGTTTTTGGGCG
TCTTAAGCAAGATGCTCATTTTATCAATCAATTGGTGGATTTGTATAAGGAACTCAAGGCTTCTAATCTGACTGTCTTAG
AATTAAATCAGCTAAATTCGGCTGAAAAGCAGGAAGATTTGATTAAGATTTTTACAGAGGTTGAAACCATTTTAAGTGCT
GGCCATTTTGATAATCAAAGCAAGATTGCCTTCTTTGCACAACAGATCAAATTCGGTCATTTAGATACGGCTTTGCAGGA
TTTGACAATTGTTGTTGATGGTTTCACACGTTTTTCTGCTGAAGAAGAAAACCTGATAGGACTGTTATATGAAAAAGGTG
TTGACATTATCATTGGGACTTATATTAGTCAAAAAGCTTATCGTTCAACTTTTTCGAATGAGAATGTCTATCAGGCTAGT
CTTGATTTCATTCGTGGTTTGGCTGGTAAATTTCAAACCAAACCAGAATATGTGGTATCAAAGCAAGAAGCTTTGCCTGC
CTTTACCAAACTTTCTCAGCTATTTGAAAGTTGTCATGATTTTTCGGACAGTCAGCTGGTCTTGACAGATAAGGACAAGG
AACATGTAACTATCTGGGATGTCATTAATCAAAAAGAAGAAGTGGAACATGTTGCTAAGAGCATTCGCCGGAAACTCTAT
GAAGGTCATCGTTACAAGGATATTTTGGTCCTTCTTGGGGATGCGGATGCCTATAAACTGCAGATTGGCAAGATTTTTGA
TAAGTATGAAATTCCCTATTATTTTGGCAAAGCGGAGTCCATGAGTTCGCACCCGCTGGTTCATTTTGTGGATTCTTTGG
AGCGGGTTAAACGTTATAATTTTCGTGCTGAGGATGTCATGAATCTGCTCAAATCAGGCCTATATGGCAAAATCAGGCAA
AATCAGTTAGATAAATTGGAGCAGTATGTCATTTATGCTGATATTAAAGGAAAAACAAAGTTTTTTAAGGACTTTACGCT
AGATAATCATGGGCAATTTGATCTAAAAGCCTTAAATAAACTGCGGGCAGAAGTCATGTCACCTTTACAAGAGCTGATTA
AAATACAGGCCCAAAAGGGAGACAGTATCCTGCAAAAATTGACCAACTTTTTAGAAGCCATTTCTTTAACGAATAATTTT
TCAAAATTAATCCAAGGTGTCAGTGACACTGAGCAGGAAAAGAACGAGCAAGTTTGGAAAACTTTTACGGTTATTTTAGA
GCAATTTCATACGATTTTTGGACAAGAAAAAATGAAGTTGGCTGATTTTCTGGCACTCTTACGCAGCGGCATGCTGGCGG
CTGATTATCGGACGGTTCCTGCCAGTGTTGATGTTGTGACAGTTAAGTCTTATGATTTGGTGGAGCCCCATAGCAATAAA
TTTGTTTTTGCTCTGGGAATGACCCAGTCTCATTTTCCTAAAATTGTCCAAAATAAGAGTCTTATTTCGGATGAAGAACG
TGCAAAAATCAATGAAGCAACTCCTGACAATCGTCGTTTTGATATTGTCACTAAGGAAAATCTCAAGAAAAATCATTTCA
CCGCCCTGTCACTCTTCAATGCGGCCACTCAGGAATTGGTCTTAACCTTGCCGCAGATTTTAAACGAGGCAGAGGACAAC
ACCTCCTCCTATTTGCTTGAATTGCAAGATATGGGTGTGCCAGTTGTCGAAAAGGGGGGCAATCGTTTAGCTGCGGATCC
AGAAGATATTGGCAATTACAAGGCGCTTTTGTCGCGTGTGATTGAGCTTAACCGCTCTGCTATTGACCAAGAATTATCTA
AAGAAGAGCAGACCTTTTGGTCAGTTGCTGTTCGCTATTTACGCCAAAAATTGGCAAAAGAAGGACTTACGATTCCTGAA
GTGAACGATAAGATGCAGACCAAGCAGGTCGCTGCAGAGGTTATGGCAGCACGTTTTCCAATAGATCAACCTTTAAATCT
ATCATCGTCTGCCCTGACAACTTTTTACAATAACCAGTATCTCTATTTCCTTCAATATATCCTTGGTTTGCAAGAGCTTG
AAACGATTCATCCTGATGCTAGAAATCATGGGACTTATTTGCACCGCGTGTTTGAATTGGTTATGCAAGATCAATCTACT
GATGATTTTGACAGTAAATTAAATCGTGCCATTGATATAACCAACCATGAGGATAGCTTTCACTTGGTTTATAATGAAGA
TGAGGAAAGTCGCTATGCTTTGGGTATTTTAGAAGATATTGCTCGTAGTACGGCTACCATTTTAAAAGGGGATAATCCTG
TTCAGGTAGAAAGTGAAGAAGAAGCCTTTGAGTTAATGCTGGATCAAACTGTTAAAATCAGAGGGGTTATTGATCGCATT
GATCGCTTGTCAGATGGCAGTTTAGGAATTGTTGATTATAAATCAAGTAAAAATACCTTTGATCTGCAAAAATTTTACAA
TGGACTCAGTCCGCAGTTAGTGACTTATATAGAAGCTCTTCGGTCTTGTAAAAATTTGAATGATACAGATAAGATTTTTG
GAGCCATGTATCTTCATATGCAGGAACCTAAAACTGATTTAGCCAATATGAAATCCATCGAAAAAATTCCGGAAACGGTT
CATAAGAATTTAAGTTATAAGGGACTCTTTTTAGAAGATGAAAAAGCACATTTGGCTAATGGGAAATACCATTTGCATGA
TGCTGTCTATAGTCAAAAAGAAGTTGATTTGCTGCTTGATTATAATAAAAGACTCTATCGCAGTGCCGCAAAGCAAATCA
GAAAAGGAAACTTTCTCATTAACCCCTACAGTCAGGATGGCAAATCTGTTCAGGGAGAACAGCTGAAGGCTATTACACAT
TTTGAAGCAGATCGCCACATGCCTTATGCTCGTAAACTTTATCAGCTGCCACGCAAAGAAAAACGTCAGGGTTTCTTGGC
GTTAATGCAGTCTAAAAAAGAGGAGGAAGGTAATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.175

99.352

0.439

Multiple sequence alignment