Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   HEQ84_RS02220 Genome accession   NZ_CP050870
Coordinates   401457..401900 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 396457..406900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ84_RS02200 (HEQ84_02180) - 396981..397733 (-) 753 WP_024704202.1 NUDIX hydrolase -
  HEQ84_RS02205 (HEQ84_02185) - 397797..398903 (-) 1107 WP_024009756.1 AAA family ATPase -
  HEQ84_RS02210 (HEQ84_02190) gdhA 399247..400599 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  HEQ84_RS02215 (HEQ84_02195) - 400857..401267 (+) 411 WP_011680804.1 peptide deformylase -
  HEQ84_RS02220 (HEQ84_02200) rcrR 401457..401900 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  HEQ84_RS02225 (HEQ84_02205) rcrP 401904..403718 (+) 1815 WP_024704204.1 ABC transporter ATP-binding protein Regulator
  HEQ84_RS02230 (HEQ84_02210) rcrQ 403708..405486 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  HEQ84_RS02235 (HEQ84_02215) - 405642..405899 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=435354 HEQ84_RS02220 WP_002945408.1 401457..401900(+) (rcrR) [Streptococcus thermophilus strain CS6]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=435354 HEQ84_RS02220 WP_002945408.1 401457..401900(+) (rcrR) [Streptococcus thermophilus strain CS6]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537