Detailed information NTG0435332

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IMP66_RS05255
• Genome accession: NZ_CP062883
• Coordinates: 1094158..1095150 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Res13-Lact-PEA06-10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1089158..1100150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMP66_RS05225 (IMP66_05230)	ispD	1089219..1089929 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IMP66_RS05230 (IMP66_05235)	ispF	1089929..1090408 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IMP66_RS05235 (IMP66_05240)	truD	1090405..1091454 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IMP66_RS05240 (IMP66_05245)	surE	1091435..1092196 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IMP66_RS05245 (IMP66_05250)	pcm	1092190..1092816 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IMP66_RS05250 (IMP66_05255)	nlpD	1093001..1094095 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IMP66_RS05255 (IMP66_05260)	rpoS	1094158..1095150 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IMP66_RS05260 (IMP66_05265)	ygbN	1095244..1096608 (-)	1365	WP_000104459.1	GntP family transporter	-
IMP66_RS05265 (IMP66_05270)	ygbM	1096697..1097473 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IMP66_RS05270 (IMP66_05275)	ygbL	1097478..1098116 (-)	639	WP_001278994.1	aldolase	-
IMP66_RS05275 (IMP66_05280)	otnK	1098113..1099375 (-)	1263	WP_195686532.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=435332 IMP66_RS05255 WP_000081550.1 1094158..1095150(+) (rpoS) [Escherichia coli strain Res13-Lact-PEA06-10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=435332 IMP66_RS05255 WP_000081550.1 1094158..1095150(+) (rpoS) [Escherichia coli strain Res13-Lact-PEA06-10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715