Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   SMUGS5_RS04615 Genome accession   NC_018089
Coordinates   966648..967718 (-) Length   356 a.a.
NCBI ID   WP_014834962.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 961648..972718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS04595 (SMUGS5_04525) citE 961796..962698 (+) 903 WP_002263226.1 citrate (pro-3S)-lyase subunit beta -
  SMUGS5_RS04600 (SMUGS5_04530) citF 962685..964220 (+) 1536 WP_002267376.1 citrate lyase subunit alpha -
  SMUGS5_RS04605 (SMUGS5_04535) citX 964213..964749 (+) 537 WP_014834959.1 citrate lyase holo-[acyl-carrier protein] synthase -
  SMUGS5_RS04610 (SMUGS5_04540) - 964762..966153 (+) 1392 WP_014834960.1 oxaloacetate decarboxylase subunit alpha -
  SMUGS5_RS10055 (SMUGS5_04545) - 966221..966358 (-) 138 Protein_897 IS3 family transposase -
  SMUGS5_RS04615 (SMUGS5_04550) xerS 966648..967718 (-) 1071 WP_014834962.1 tyrosine recombinase XerS Machinery gene
  SMUGS5_RS04620 (SMUGS5_04555) - 967939..968847 (+) 909 WP_002265017.1 ABC transporter ATP-binding protein -
  SMUGS5_RS04625 (SMUGS5_04560) - 968868..969611 (+) 744 WP_002265018.1 ABC transporter permease -
  SMUGS5_RS04630 (SMUGS5_04565) - 969659..970537 (-) 879 WP_014834963.1 sensor histidine kinase -
  SMUGS5_RS04635 (SMUGS5_04570) - 970537..971229 (-) 693 WP_002265020.1 response regulator transcription factor -
  SMUGS5_RS04640 (SMUGS5_04575) - 971362..972195 (-) 834 WP_002282533.1 glycosyltransferase family 8 protein -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41620.93 Da        Isoelectric Point: 9.6657

>NTDB_id=43526 SMUGS5_RS04615 WP_014834962.1 966648..967718(-) (xerS) [Streptococcus mutans GS-5]
MRRELLLEKIDELKELMPWYVLEYYQSKLTIPYSFTTLYEYLKEYRRFFEWLINSGVSDANKLADIPLETLEHLSKKDME
SFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGNETMEFLEYVDCEYEHKLSKRALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDS
VNVAGFAKPYLENYITIRRGRYKAEKTDLAFFLSEYRGVPNRMDASSIEKMVAKYSQEFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=43526 SMUGS5_RS04615 WP_014834962.1 966648..967718(-) (xerS) [Streptococcus mutans GS-5]
ATGAGACGTGAACTCTTACTTGAAAAAATTGACGAACTTAAGGAACTTATGCCTTGGTATGTGCTAGAGTATTATCAATC
TAAATTGACAATTCCTTATAGTTTTACGACCTTATACGAATATTTAAAAGAATATCGGCGTTTCTTTGAATGGTTAATCA
ATTCTGGCGTTTCTGATGCGAATAAACTTGCCGATATTCCGCTGGAAACTTTGGAGCATCTTAGTAAAAAAGATATGGAA
TCCTTTATTCTTTATTTACGAGAACGAACTCTTTTAAACACTAAAAACAAACGTCAAGGTGTTTCTCAGACAACGATAAA
CCGCACACTTTCAGCCTTATCAAGCCTTTATAAATACTTGACTGAGGAAGTTGAAAATGCTGATGGTGAACCTTATTTTT
ATCGAAATGTCATGAAAAAGGTATCAACTAAAAAGAAAAAGGAAACATTGGCCGCACGAGCTGAGAATATTAAACAAAAG
CTCTTTTTAGGCAATGAAACAATGGAATTTTTAGAATATGTGGATTGTGAATATGAACACAAACTTTCTAAACGCGCTCT
TTCCTCTTTTCGAAAAAATAAAGAAAGAGATTTGGCAATTATTGCTTTGCTGCTAGCATCTGGAGTTCGTCTTTCAGAGG
CTGTTAACCTTGATCTTAAGGATGTTAATCTCAATATGATGATTATTGAAGTTACCCGTAAGGGCGGCAAACACGATTCG
GTTAATGTCGCTGGTTTCGCTAAACCTTATTTAGAAAACTACATTACTATCAGACGGGGGCGCTACAAGGCTGAAAAGAC
TGATCTAGCTTTCTTTTTATCCGAATATCGTGGTGTTCCTAATCGCATGGATGCTTCTTCTATTGAAAAAATGGTTGCTA
AATATTCGCAAGAGTTCAAAATCCGCGTCACTCCCCACAAACTAAGACACACGCTTGCAACTAGATTATACGATGCTACC
AAATCACAAGTTTTGGTCAGTCATCAATTAGGTCATGCTTCTACTCAAGTAACAGACCTTTATACTCATATCGTTAATGA
TGAACAAAAAAATGCTTTAGATAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823


Multiple sequence alignment