Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMP69_RS00560 Genome accession   NZ_CP062876
Coordinates   112993..114420 (-) Length   475 a.a.
NCBI ID   WP_000980579.1    Uniprot ID   -
Organism   Escherichia coli O157:H16 strain Res13-Lact-PEA12-26     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107993..119420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP69_RS00530 (IMP69_00530) yeeZ 108048..108872 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  IMP69_RS00535 (IMP69_00535) yeeY 108918..109847 (+) 930 Protein_107 LysR substrate-binding domain-containing protein -
  IMP69_RS00540 (IMP69_00540) yoeI 110062..110124 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMP69_RS00545 (IMP69_00545) plaP 110114..111472 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMP69_RS00550 (IMP69_00550) tsuA 111651..112709 (+) 1059 WP_032294221.1 thiosulfate utilization transporter TsuA/YeeE -
  IMP69_RS00555 (IMP69_00555) tsuB 112723..112950 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMP69_RS00560 (IMP69_00560) sbcB 112993..114420 (-) 1428 WP_000980579.1 exodeoxyribonuclease I Machinery gene
  IMP69_RS00565 (IMP69_00565) dacD 114629..115795 (+) 1167 WP_001488162.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMP69_RS00570 (IMP69_00570) sbmC 115914..116387 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  IMP69_RS00575 (IMP69_00575) yeeA 116586..117644 (+) 1059 WP_001200891.1 FUSC family protein -
  IMP69_RS00580 (IMP69_00580) tmaR 117816..118145 (+) 330 WP_000450409.1 DUF496 family protein -
  IMP69_RS00585 (IMP69_00585) - 118246..118437 (-) 192 Protein_117 EutP/PduV family microcompartment system protein -
  IMP69_RS00590 (IMP69_00590) cobU 118604..119149 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54516.87 Da        Isoelectric Point: 5.4720

>NTDB_id=435235 IMP69_RS00560 WP_000980579.1 112993..114420(-) (sbcB) [Escherichia coli O157:H16 strain Res13-Lact-PEA12-26]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=435235 IMP69_RS00560 WP_000980579.1 112993..114420(-) (sbcB) [Escherichia coli O157:H16 strain Res13-Lact-PEA12-26]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAATGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581