Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMP76_RS05340 Genome accession   NZ_CP062871
Coordinates   1042454..1043881 (+) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Lact-PEA14-20     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037454..1048881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP76_RS05310 (IMP76_05305) pduU 1037831..1038181 (+) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -
  IMP76_RS05315 (IMP76_05310) - 1038186..1038629 (+) 444 WP_069896142.1 EutP/PduV family microcompartment system protein -
  IMP76_RS05320 (IMP76_05315) tmaR 1038730..1039059 (-) 330 WP_000450409.1 DUF496 family protein -
  IMP76_RS05325 (IMP76_05320) yeeA 1039231..1040289 (-) 1059 WP_001200891.1 FUSC family protein -
  IMP76_RS05330 (IMP76_05325) sbmC 1040487..1040960 (-) 474 WP_032224276.1 DNA gyrase inhibitor SbmC -
  IMP76_RS05335 (IMP76_05330) dacD 1041079..1042245 (-) 1167 WP_089586915.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMP76_RS05340 (IMP76_05335) sbcB 1042454..1043881 (+) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  IMP76_RS05345 (IMP76_05340) tsuB 1043924..1044151 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMP76_RS05350 (IMP76_05345) tsuA 1044165..1045223 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  IMP76_RS05355 (IMP76_05350) plaP 1045402..1046760 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMP76_RS05360 (IMP76_05355) yoeI 1046750..1046812 (-) 63 WP_010723108.1 membrane protein YoeI -
  IMP76_RS05365 (IMP76_05360) yeeY 1047027..1047956 (-) 930 WP_032191639.1 LysR substrate-binding domain-containing protein -
  IMP76_RS05370 (IMP76_05365) yeeZ 1048002..1048826 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=435170 IMP76_RS05340 WP_000980607.1 1042454..1043881(+) (sbcB) [Escherichia coli strain Res13-Lact-PEA14-20]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=435170 IMP76_RS05340 WP_000980607.1 1042454..1043881(+) (sbcB) [Escherichia coli strain Res13-Lact-PEA14-20]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAACATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTCGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583