Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HC692_RS17060 Genome accession   NZ_CP050840
Coordinates   3397675..3398271 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain Bckp101     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3392675..3403271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC692_RS17045 (HC692_17045) helD 3392883..3394937 (-) 2055 WP_020324408.1 DNA helicase IV -
  HC692_RS17050 (HC692_17050) - 3395062..3395508 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HC692_RS17055 (HC692_17055) yccS 3395526..3397661 (+) 2136 WP_002898422.1 YccS family putative transporter -
  HC692_RS17060 (HC692_17060) sxy/tfoX 3397675..3398271 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HC692_RS17065 (HC692_17065) sulA 3398620..3399129 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  HC692_RS17070 (HC692_17070) ompA 3399482..3400552 (+) 1071 WP_002898408.1 porin OmpA -
  HC692_RS17075 (HC692_17075) matP 3400684..3401136 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HC692_RS17080 (HC692_17080) - 3401322..3403079 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=435154 HC692_RS17060 WP_004179217.1 3397675..3398271(-) (sxy/tfoX) [Klebsiella pneumoniae strain Bckp101]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=435154 HC692_RS17060 WP_004179217.1 3397675..3398271(-) (sxy/tfoX) [Klebsiella pneumoniae strain Bckp101]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51