Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMP84_RS08545 Genome accession   NZ_CP062868
Coordinates   1808834..1810261 (-) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Lact-PEB01-20     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803834..1815261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP84_RS08515 (IMP84_08515) yeeZ 1803889..1804713 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IMP84_RS08520 (IMP84_08520) yeeY 1804759..1805688 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  IMP84_RS08525 (IMP84_08525) yoeI 1805903..1805965 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMP84_RS08530 (IMP84_08530) plaP 1805955..1807313 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMP84_RS08535 (IMP84_08535) tsuA 1807492..1808550 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  IMP84_RS08540 (IMP84_08540) tsuB 1808564..1808791 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMP84_RS08545 (IMP84_08545) sbcB 1808834..1810261 (-) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  IMP84_RS08550 (IMP84_08550) dacD 1810470..1811636 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMP84_RS08555 (IMP84_08555) sbmC 1811755..1812228 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  IMP84_RS08560 (IMP84_08560) yeeA 1812426..1813484 (+) 1059 WP_001200905.1 FUSC family protein -
  IMP84_RS08565 (IMP84_08565) tmaR 1813656..1813985 (+) 330 WP_000450409.1 DUF496 family protein -
  IMP84_RS24290 (IMP84_08570) - 1814086..1814268 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IMP84_RS23985 - 1814388..1814468 (+) 81 WP_023441679.1 hypothetical protein -
  IMP84_RS08580 (IMP84_08580) - 1814757..1814837 (-) 81 Protein_1693 hypothetical protein -
  IMP84_RS08585 (IMP84_08585) yeeW 1814883..1815077 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=435112 IMP84_RS08545 WP_000980563.1 1808834..1810261(-) (sbcB) [Escherichia coli strain Res13-Lact-PEB01-20]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=435112 IMP84_RS08545 WP_000980563.1 1808834..1810261(-) (sbcB) [Escherichia coli strain Res13-Lact-PEB01-20]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581