Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HC709_RS17350 Genome accession   NZ_CP050829
Coordinates   3416865..3417461 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain Bckp067     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3411865..3422461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC709_RS17335 (HC709_17335) helD 3412073..3414127 (-) 2055 WP_014907883.1 DNA helicase IV -
  HC709_RS17340 (HC709_17340) - 3414252..3414698 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HC709_RS17345 (HC709_17345) yccS 3414716..3416851 (+) 2136 WP_002898422.1 YccS family putative transporter -
  HC709_RS17350 (HC709_17350) sxy/tfoX 3416865..3417461 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HC709_RS17355 (HC709_17355) sulA 3417810..3418319 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  HC709_RS17360 (HC709_17360) ompA 3418672..3419742 (+) 1071 WP_002898408.1 porin OmpA -
  HC709_RS17365 (HC709_17365) matP 3419874..3420326 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HC709_RS17370 (HC709_17370) - 3420512..3422269 (+) 1758 WP_048265355.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=435101 HC709_RS17350 WP_004179217.1 3416865..3417461(-) (sxy/tfoX) [Klebsiella pneumoniae strain Bckp067]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=435101 HC709_RS17350 WP_004179217.1 3416865..3417461(-) (sxy/tfoX) [Klebsiella pneumoniae strain Bckp067]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51