Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IMP90_RS19880 Genome accession   NZ_CP062865
Coordinates   4110130..4110597 (+) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli O39:H21 strain Res13-Lact-PEB08-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4105130..4115597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP90_RS19835 (IMP90_19825) rplP 4105240..4105650 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  IMP90_RS19840 (IMP90_19830) rpsC 4105663..4106364 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  IMP90_RS19845 (IMP90_19835) rplV 4106382..4106714 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  IMP90_RS19850 (IMP90_19840) rpsS 4106729..4107007 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  IMP90_RS19855 (IMP90_19845) rplB 4107024..4107845 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  IMP90_RS19860 (IMP90_19850) rplW 4107863..4108165 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  IMP90_RS19865 (IMP90_19855) rplD 4108162..4108767 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  IMP90_RS19870 (IMP90_19860) rplC 4108778..4109407 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  IMP90_RS19875 (IMP90_19865) rpsJ 4109440..4109751 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  IMP90_RS19880 (IMP90_19870) pilD 4110130..4110597 (+) 468 WP_000340171.1 A24 family peptidase Machinery gene
  IMP90_RS19885 (IMP90_19875) bfr 4110594..4111070 (-) 477 WP_000675515.1 bacterioferritin -
  IMP90_RS19890 (IMP90_19880) bfd 4111143..4111337 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  IMP90_RS19895 (IMP90_19885) tuf 4111520..4112704 (-) 1185 WP_000031783.1 elongation factor Tu -
  IMP90_RS19900 (IMP90_19890) fusA 4112775..4114889 (-) 2115 WP_000124700.1 elongation factor G -
  IMP90_RS19905 (IMP90_19895) rpsG 4114986..4115456 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=435060 IMP90_RS19880 WP_000340171.1 4110130..4110597(+) (pilD) [Escherichia coli O39:H21 strain Res13-Lact-PEB08-01]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=435060 IMP90_RS19880 WP_000340171.1 4110130..4110597(+) (pilD) [Escherichia coli O39:H21 strain Res13-Lact-PEB08-01]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361