Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SMUGS5_RS02665 Genome accession   NC_018089
Coordinates   535429..537087 (+) Length   552 a.a.
NCBI ID   WP_002268628.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 530429..542087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS02640 (SMUGS5_02540) xseA 531736..533079 (+) 1344 WP_002280680.1 exodeoxyribonuclease VII large subunit -
  SMUGS5_RS02645 (SMUGS5_02545) - 533054..533275 (+) 222 WP_002262107.1 exodeoxyribonuclease VII small subunit -
  SMUGS5_RS02650 (SMUGS5_02550) - 533272..534141 (+) 870 WP_002264711.1 polyprenyl synthetase family protein -
  SMUGS5_RS02655 (SMUGS5_02555) - 534134..534961 (+) 828 WP_014834880.1 TlyA family RNA methyltransferase -
  SMUGS5_RS02660 (SMUGS5_02560) - 534948..535412 (+) 465 WP_002274138.1 arginine repressor -
  SMUGS5_RS02665 (SMUGS5_02565) recN 535429..537087 (+) 1659 WP_002268628.1 DNA repair protein RecN Machinery gene
  SMUGS5_RS02670 (SMUGS5_02570) - 537312..538151 (+) 840 WP_014834881.1 DegV family protein -
  SMUGS5_RS02675 (SMUGS5_02575) - 538144..539001 (+) 858 WP_002280679.1 SGNH/GDSL hydrolase family protein -
  SMUGS5_RS02680 (SMUGS5_02580) - 538976..539575 (+) 600 WP_002262100.1 YpmS family protein -
  SMUGS5_RS02685 (SMUGS5_02585) - 539672..539947 (+) 276 WP_002262099.1 HU family DNA-binding protein -
  SMUGS5_RS09990 - 540039..540156 (-) 118 Protein_508 IS3 family transposase -
  SMUGS5_RS02690 - 540328..541446 (-) 1119 Protein_509 Acg family FMN-binding oxidoreductase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62644.11 Da        Isoelectric Point: 5.1194

>NTDB_id=43504 SMUGS5_RS02665 WP_002268628.1 535429..537087(+) (recN) [Streptococcus mutans GS-5]
MLLEIAIKNFAIIEEISLNFERGMTVLTGETGAGKSIVIDAMNMMLGSRASIDVIRHGSPKAEIEGFFSVDKNPSLEQLL
ADQGIAFSDELIIRREILQNGRSISRINGQMVNLATLRAVGQYLVDIHGQHDQEELMRPQKHIQLLDEFGDEVFQVSKQH
YQDLFDRYRDLRKRVLNKRKNEQEHQARIEMLEYQIGEIEAANLQSGEDTKLLKQRDKLMNHKLIVDTLTNAYVLLDNED
FSSLTNVRSAMNDLQSLEEYDAEYKDLSNNLSESYYILEDVSKRLETILDHMDFDANTLVKLEARLDVINTITRKYGGSV
DDVLAYFDNISKEYNHLTGNGLAFDDMEKELKILERSLLEAAAQLSQKRHAIAETLSQEIKQELKDLYMDKADFKVVFTK
GKFNREGNETVAFHISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRREDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
NHGQVLAISHIPQVIAISDYQYFIEKQSSKATTVSTVRLLNQEERIEEIAKMLAGDNVTQAARQQAKELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=43504 SMUGS5_RS02665 WP_002268628.1 535429..537087(+) (recN) [Streptococcus mutans GS-5]
ATGCTTTTAGAAATTGCCATTAAAAATTTTGCTATTATTGAAGAAATCTCACTCAATTTTGAAAGGGGAATGACTGTTCT
GACCGGTGAAACAGGTGCAGGGAAGTCTATTGTCATTGATGCCATGAATATGATGCTAGGCAGTAGAGCCAGCATAGATG
TCATTCGTCATGGCAGTCCTAAAGCAGAGATTGAGGGTTTTTTCTCTGTGGATAAAAATCCTTCTTTAGAGCAGTTACTG
GCTGATCAGGGAATTGCTTTTTCAGATGAGCTAATCATTCGCCGTGAGATTTTACAAAATGGTCGCAGTATTAGTCGTAT
CAATGGTCAAATGGTTAATCTGGCAACTCTGCGTGCCGTTGGGCAGTATTTAGTTGATATTCATGGACAGCATGATCAAG
AAGAACTGATGCGGCCGCAAAAGCATATTCAGTTGTTGGATGAATTTGGTGATGAGGTATTTCAGGTAAGCAAGCAGCAT
TATCAGGACTTATTTGATCGCTATCGGGACTTACGTAAGCGCGTCTTGAATAAACGTAAGAATGAGCAAGAACATCAAGC
ACGTATTGAAATGCTGGAGTATCAGATAGGAGAGATTGAAGCAGCAAACTTACAATCTGGTGAGGATACCAAGCTCTTAA
AACAACGTGATAAACTTATGAATCATAAGCTTATTGTTGATACCTTAACCAATGCTTATGTTTTACTTGATAATGAAGAT
TTTTCGAGTTTGACCAATGTTCGTTCAGCTATGAATGATTTGCAGAGTTTGGAAGAATATGATGCTGAGTACAAGGATTT
GTCCAATAATCTCAGCGAATCTTACTATATTTTAGAAGATGTTAGCAAACGTCTAGAGACCATACTGGATCATATGGATT
TTGATGCCAATACTTTGGTTAAACTTGAAGCACGTCTTGATGTTATCAACACCATCACGCGTAAGTATGGTGGTTCAGTT
GATGATGTTTTGGCTTATTTTGACAATATCAGTAAGGAATACAATCATTTGACGGGAAATGGCCTCGCTTTTGATGATAT
GGAAAAAGAACTAAAAATTTTGGAGCGCTCACTATTAGAAGCAGCAGCTCAATTGAGTCAAAAACGCCATGCCATTGCGG
AAACCTTGTCTCAGGAGATTAAGCAGGAACTAAAAGATCTCTACATGGATAAGGCTGATTTTAAAGTTGTTTTTACTAAA
GGAAAATTTAATCGCGAGGGAAATGAAACAGTCGCTTTTCATATTTCGACTAATCCTGGCGAAGACTTTAAGCCTTTGGT
CAAAGTCGCTTCTGGTGGAGAGCTGTCTCGTCTCATGTTAGCCATTAAGTCAGCTTTTTCACGTCGTGAAGATAAGACTA
GCATTGTTTTTGATGAAGTTGATACAGGTGTTTCAGGACGTGTCGCTCAGGCTATTGCTCAAAAAATTTACAAAATAGGC
AATCACGGTCAAGTTTTAGCTATCTCCCATATCCCGCAAGTCATTGCCATCAGTGATTATCAGTACTTTATTGAAAAACA
AAGCAGCAAAGCCACAACTGTCTCAACGGTTCGCCTTTTAAATCAAGAGGAAAGAATTGAAGAAATCGCTAAGATGTTGG
CAGGGGATAATGTGACCCAAGCTGCGCGCCAGCAAGCTAAAGAACTATTAAAAAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.882

100

0.442