Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HEQ52_RS13440 Genome accession   NZ_CP050820
Coordinates   2811809..2812762 (-) Length   317 a.a.
NCBI ID   WP_021136621.1    Uniprot ID   -
Organism   Clostridium botulinum strain V73     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2802330..2822547 2811809..2812762 within 0


Gene organization within MGE regions


Location: 2802330..2822547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ52_RS13395 (HEQ52_13425) - 2802330..2802665 (-) 336 WP_021136594.1 DNRLRE domain-containing protein -
  HEQ52_RS13400 (HEQ52_13430) - 2803347..2804216 (+) 870 WP_024931865.1 hypothetical protein -
  HEQ52_RS13405 (HEQ52_13435) - 2804487..2805194 (+) 708 WP_024931864.1 LytTR family DNA-binding domain-containing protein -
  HEQ52_RS13410 (HEQ52_13440) - 2805197..2806570 (+) 1374 WP_222643130.1 sensor histidine kinase -
  HEQ52_RS13415 (HEQ52_13445) - 2806762..2807646 (-) 885 Protein_2612 ATP-binding cassette domain-containing protein -
  HEQ52_RS13420 (HEQ52_13450) - 2807895..2808896 (-) 1002 WP_021136622.1 AraC family transcriptional regulator -
  HEQ52_RS13425 (HEQ52_13455) - 2809099..2810043 (-) 945 WP_011948721.1 siderophore ABC transporter substrate-binding protein -
  HEQ52_RS13430 (HEQ52_13460) - 2810117..2810872 (-) 756 WP_061323618.1 ATP-binding cassette domain-containing protein -
  HEQ52_RS13435 (HEQ52_13465) - 2810869..2811819 (-) 951 WP_024931739.1 iron chelate uptake ABC transporter family permease subunit -
  HEQ52_RS13440 (HEQ52_13470) ceuB 2811809..2812762 (-) 954 WP_021136621.1 ABC transporter permease Machinery gene
  HEQ52_RS13445 (HEQ52_13475) - 2813008..2813766 (+) 759 WP_003388491.1 AraC family transcriptional regulator -
  HEQ52_RS13450 (HEQ52_13480) - 2814002..2814688 (+) 687 WP_011987957.1 DNA alkylation repair protein -
  HEQ52_RS13455 (HEQ52_13485) - 2815028..2816434 (-) 1407 WP_021136620.1 HAMP domain-containing sensor histidine kinase -
  HEQ52_RS13460 (HEQ52_13490) - 2816434..2817135 (-) 702 WP_024931741.1 response regulator transcription factor -
  HEQ52_RS13465 (HEQ52_13495) - 2817395..2817631 (-) 237 WP_003361003.1 SHOCT domain-containing protein -
  HEQ52_RS13470 (HEQ52_13500) - 2817951..2818259 (-) 309 WP_003361001.1 hypothetical protein -
  HEQ52_RS13475 (HEQ52_13505) - 2818687..2820492 (+) 1806 WP_003361000.1 sulfite exporter TauE/SafE family protein -
  HEQ52_RS13480 (HEQ52_13510) - 2820849..2822108 (-) 1260 Protein_2625 cytochrome P450 -
  HEQ52_RS13485 - 2822413..2822547 (-) 135 WP_003360996.1 LDCC motif putative metal-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34886.24 Da        Isoelectric Point: 10.0382

>NTDB_id=435035 HEQ52_RS13440 WP_021136621.1 2811809..2812762(-) (ceuB) [Clostridium botulinum strain V73]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSISSWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSIVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=435035 HEQ52_RS13440 WP_021136621.1 2811809..2812762(-) (ceuB) [Clostridium botulinum strain V73]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTCGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATAATCTTATT
CAGAGTATTTCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.447

98.107

0.505