Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HED61_RS12560 Genome accession   NZ_CP050816
Coordinates   2553309..2554979 (-) Length   556 a.a.
NCBI ID   WP_219644997.1    Uniprot ID   -
Organism   Enterococcus gallinarum strain EG81     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2548309..2559979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HED61_RS12535 (HED61_12495) pstB 2548450..2549256 (-) 807 WP_003126219.1 phosphate ABC transporter ATP-binding protein PstB -
  HED61_RS12540 (HED61_12500) pstA 2549270..2550154 (-) 885 WP_003126218.1 phosphate ABC transporter permease PstA -
  HED61_RS12545 (HED61_12505) pstC 2550154..2551074 (-) 921 WP_003126217.1 phosphate ABC transporter permease subunit PstC -
  HED61_RS12550 (HED61_12510) - 2551193..2552047 (-) 855 WP_003126216.1 phosphate ABC transporter substrate-binding protein PstS -
  HED61_RS12555 (HED61_12515) - 2552458..2553186 (-) 729 WP_138372056.1 alpha/beta hydrolase -
  HED61_RS12560 (HED61_12520) recN 2553309..2554979 (-) 1671 WP_219644997.1 DNA repair protein RecN Machinery gene
  HED61_RS12565 (HED61_12525) argR 2554992..2555441 (-) 450 WP_003126212.1 arginine repressor -
  HED61_RS12570 (HED61_12530) - 2555535..2556365 (-) 831 WP_003126211.1 TlyA family RNA methyltransferase -
  HED61_RS12575 (HED61_12535) - 2556365..2557249 (-) 885 WP_175413577.1 polyprenyl synthetase family protein -
  HED61_RS12580 (HED61_12540) - 2557258..2557476 (-) 219 WP_003126209.1 exodeoxyribonuclease VII small subunit -
  HED61_RS12585 (HED61_12545) xseA 2557457..2558809 (-) 1353 WP_003126207.1 exodeoxyribonuclease VII large subunit -
  HED61_RS12590 (HED61_12550) - 2558811..2559662 (-) 852 WP_005471160.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62770.80 Da        Isoelectric Point: 4.4634

>NTDB_id=435013 HED61_RS12560 WP_219644997.1 2553309..2554979(-) (recN) [Enterococcus gallinarum strain EG81]
MLLELTIQNFAIISHLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSTDYLRQGAEKCRLEGLFEWPQQPEFQELT
EELGIDQEDVLIVQRDITQAGKTICRVNGRTVTLASLRKIGLFLVDIQGQNEHQELLQPERHLSLVDGFGDDGFKAELLH
YQDAYQEYRNLEKQVRNIQENEQLYVQRMDMLRFQQEEIAQAELIEGEEENLIEEREKLTNYQKIVDALGQSYGALSSEE
MSSVDGVSVALSEIQSIAHLDQAYEKITETIQSAYYLLQDAASDISRQLDNLELDEGRLEEVVNRLETIRQLKRKYGESI
SVILAYYEEISKEISESAYTEGQLEQLEEQLTAKADAVWALAEQLHVKRREIAHRLEKEIVQELNDLYMEHAQFEVRFAN
GKQLTATGFDSVAFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKISKI
ALNSQVLCITHLPQVAAVADYQYFIEKAIQEGRTETRVRQLSYEERVTEIARMLSGAEITELTVEHARELLALAHQ

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=435013 HED61_RS12560 WP_219644997.1 2553309..2554979(-) (recN) [Enterococcus gallinarum strain EG81]
ATGCTTTTAGAGTTGACCATTCAAAATTTCGCAATTATTTCCCACTTACACCTTTCTTTTCATGAAGGAATGACAGCTTT
GACAGGTGAAACAGGTGCCGGGAAATCAATCATTATTGATGCGATGGGCTTGTTAGCCGGCGGACGCGGATCTACTGACT
ACTTGCGTCAAGGAGCAGAGAAATGCCGACTGGAAGGCCTTTTTGAATGGCCGCAGCAGCCTGAGTTTCAAGAACTGACA
GAAGAATTAGGCATTGATCAAGAAGATGTGCTGATCGTCCAACGGGATATCACACAAGCAGGAAAAACAATCTGTCGTGT
CAATGGACGTACGGTCACCTTGGCAAGTCTGCGAAAGATTGGTCTTTTTTTAGTTGATATTCAAGGACAAAACGAACATC
AAGAGTTATTACAGCCGGAAAGGCATCTTAGCTTGGTAGATGGGTTTGGCGATGATGGTTTCAAAGCAGAACTGCTGCAC
TATCAGGATGCCTATCAGGAATACCGCAATTTAGAAAAACAGGTTCGCAATATTCAGGAAAATGAACAATTATATGTTCA
ACGGATGGATATGCTGCGATTCCAACAAGAAGAAATCGCACAGGCTGAATTAATCGAGGGCGAAGAAGAAAATCTGATCG
AAGAACGTGAGAAGTTAACCAACTATCAGAAAATCGTCGATGCACTGGGGCAAAGTTATGGTGCGCTCTCTTCAGAAGAA
ATGAGCAGTGTCGACGGTGTAAGTGTGGCACTGTCCGAGATCCAATCTATCGCCCACTTAGATCAAGCCTATGAAAAAAT
CACTGAAACGATCCAGAGCGCTTATTATTTGTTGCAGGATGCTGCTTCTGATATTTCACGACAATTAGATAACCTTGAAC
TTGATGAAGGACGTCTAGAAGAAGTTGTCAACCGACTGGAAACGATTCGTCAATTGAAGCGCAAATATGGCGAGTCCATC
TCCGTCATCCTAGCTTATTATGAAGAAATTAGTAAGGAGATCTCTGAATCTGCCTATACTGAAGGCCAGCTGGAACAGTT
AGAAGAGCAATTGACAGCTAAGGCCGATGCTGTTTGGGCTCTTGCTGAACAACTCCATGTCAAGCGGCGAGAAATCGCAC
ATCGATTAGAAAAAGAAATTGTGCAAGAATTGAACGACCTCTATATGGAACATGCACAGTTTGAAGTTCGTTTTGCAAAT
GGCAAGCAGTTGACAGCTACTGGATTTGATAGTGTGGCTTTTTATCTCACGACCAATCCTGGGGAAGGCATGAAGCCGTT
GGTTCGGGTAGCATCTGGTGGTGAGCTGTCTCGTATCTTATTAGCATTGAAATCGATTTTTTCACGGAAACAAGGGATCA
CGAGTATTGTTTTTGACGAAGTAGATACCGGAGTCAGTGGCCGCGTGGCGCAAGCAATTGCTGAAAAGATCTCAAAAATT
GCGTTGAATTCCCAAGTATTGTGTATCACTCATTTGCCGCAAGTAGCCGCAGTAGCTGATTATCAATATTTTATTGAAAA
AGCGATCCAAGAAGGACGGACGGAGACTCGAGTTCGTCAGTTATCCTATGAAGAACGAGTGACTGAGATTGCTCGTATGT
TATCAGGAGCAGAAATCACAGAACTGACAGTAGAGCATGCGCGTGAATTGTTAGCCTTGGCTCATCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.378

100

0.487