Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HEC60_RS01930 Genome accession   NZ_CP050811
Coordinates   415972..416637 (+) Length   221 a.a.
NCBI ID   WP_147424899.1    Uniprot ID   -
Organism   Yokenella regensburgei strain W13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 410972..421637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEC60_RS01910 (HEC60_01910) - 411352..413112 (-) 1761 WP_167808568.1 Lon protease family protein -
  HEC60_RS01915 (HEC60_01915) matP 413297..413749 (+) 453 WP_006819355.1 macrodomain Ter protein MatP -
  HEC60_RS01920 (HEC60_01920) ompA 413840..414892 (-) 1053 WP_167808569.1 porin OmpA -
  HEC60_RS01925 (HEC60_01925) sulA 415246..415752 (-) 507 WP_167808570.1 SOS-induced cell division inhibitor SulA -
  HEC60_RS01930 (HEC60_01930) sxy/tfoX 415972..416637 (+) 666 WP_147424899.1 TfoX/Sxy family DNA transformation protein Regulator
  HEC60_RS01935 (HEC60_01935) yccS 416573..418714 (-) 2142 WP_120816541.1 YccS family putative transporter -
  HEC60_RS01940 (HEC60_01940) - 418733..419179 (-) 447 WP_006819361.1 YccF domain-containing protein -
  HEC60_RS01945 (HEC60_01945) helD 419302..421356 (+) 2055 WP_038258845.1 DNA helicase IV -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25257.14 Da        Isoelectric Point: 6.9678

>NTDB_id=434958 HEC60_RS01930 WP_147424899.1 415972..416637(+) (sxy/tfoX) [Yokenella regensburgei strain W13]
MKDMTYKKIHQSQEYLSPLGVIEYRALFGGYSLAIEDTVFAMVAEGELYLRVCEQSATYQVENPSPLLTLVKRGRPILLN
YFHVGEALWRNTGLLLHLSGHSLRDAQREKQKRQDKRQLRHLPNISFHTELMLLDAGIEDQRMLCSLGAQLCWLKLRERR
KGISISLLFALEGAIHGLHAAALPAQRRQELMDWVHALPGIKYPAPEEQPAAEDDIFQAEE

Nucleotide


Download         Length: 666 bp        

>NTDB_id=434958 HEC60_RS01930 WP_147424899.1 415972..416637(+) (sxy/tfoX) [Yokenella regensburgei strain W13]
ATGAAAGATATGACATATAAGAAGATCCATCAGTCGCAGGAATACCTGTCGCCACTGGGGGTGATTGAATATCGGGCGCT
GTTTGGCGGCTATAGCCTGGCTATTGAGGATACCGTTTTTGCCATGGTCGCGGAGGGGGAACTATATCTGCGGGTATGTG
AGCAAAGTGCGACCTATCAGGTCGAAAATCCTTCACCGCTACTCACACTGGTTAAGCGAGGAAGACCCATCCTGCTCAAC
TATTTCCACGTTGGCGAAGCGCTATGGCGTAATACCGGGCTTCTGCTGCATTTATCGGGTCACTCACTGCGCGATGCACA
GCGAGAGAAACAAAAGCGTCAGGACAAGCGGCAGCTGCGGCATTTGCCCAATATCTCGTTCCATACGGAGCTAATGCTGT
TGGATGCCGGGATAGAGGATCAGCGAATGCTGTGTTCGCTTGGTGCACAACTGTGCTGGCTTAAGCTGCGGGAACGGAGA
AAGGGGATCAGTATCAGTTTGCTGTTTGCGCTGGAAGGTGCAATTCATGGACTGCATGCCGCGGCGCTCCCGGCGCAAAG
GCGCCAGGAGCTGATGGATTGGGTACATGCATTACCGGGGATTAAATACCCGGCTCCAGAGGAGCAACCTGCTGCTGAAG
ACGACATATTTCAGGCAGAAGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

53.589

94.57

0.507