Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMP96_RS09745 Genome accession   NZ_CP062863
Coordinates   1802757..1804184 (-) Length   475 a.a.
NCBI ID   WP_000980602.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Lact-PEB14-36     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1797757..1809184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP96_RS09715 (IMP96_09715) yeeZ 1797812..1798636 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  IMP96_RS09720 (IMP96_09720) yeeY 1798682..1799611 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IMP96_RS09725 (IMP96_09725) yoeI 1799826..1799888 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMP96_RS09730 (IMP96_09730) plaP 1799878..1801236 (+) 1359 WP_024198437.1 putrescine/proton symporter PlaP -
  IMP96_RS09735 (IMP96_09735) tsuA 1801415..1802473 (+) 1059 WP_195714508.1 thiosulfate utilization transporter TsuA/YeeE -
  IMP96_RS09740 (IMP96_09740) tsuB 1802487..1802714 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMP96_RS09745 (IMP96_09745) sbcB 1802757..1804184 (-) 1428 WP_000980602.1 exodeoxyribonuclease I Machinery gene
  IMP96_RS09750 (IMP96_09750) dacD 1804393..1805559 (+) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMP96_RS09755 (IMP96_09755) sbmC 1805678..1806151 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  IMP96_RS09760 (IMP96_09760) yeeA 1806350..1807408 (+) 1059 WP_001200891.1 FUSC family protein -
  IMP96_RS09765 (IMP96_09765) tmaR 1807580..1807909 (+) 330 WP_000450409.1 DUF496 family protein -
  IMP96_RS09770 (IMP96_09770) - 1808010..1808375 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54427.72 Da        Isoelectric Point: 5.6070

>NTDB_id=434957 IMP96_RS09745 WP_000980602.1 1802757..1804184(-) (sbcB) [Escherichia coli strain Res13-Lact-PEB14-36]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=434957 IMP96_RS09745 WP_000980602.1 1802757..1804184(-) (sbcB) [Escherichia coli strain Res13-Lact-PEB14-36]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581