Detailed information NTG0434944

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IMP96_RS06290
• Genome accession: NZ_CP062863
• Coordinates: 1059206..1060198 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Res13-Lact-PEB14-36
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1054206..1065198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMP96_RS06260 (IMP96_06260)	ispD	1054267..1054977 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IMP96_RS06265 (IMP96_06265)	ispF	1054977..1055456 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IMP96_RS06270 (IMP96_06270)	truD	1055453..1056502 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
IMP96_RS06275 (IMP96_06275)	surE	1056483..1057244 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IMP96_RS06280 (IMP96_06280)	pcm	1057238..1057864 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IMP96_RS06285 (IMP96_06285)	nlpD	1058049..1059143 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IMP96_RS06290 (IMP96_06290)	rpoS	1059206..1060198 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IMP96_RS06295 (IMP96_06295)	ygbN	1060292..1061656 (-)	1365	WP_061350705.1	GntP family transporter	-
IMP96_RS06300 (IMP96_06300)	ygbM	1061745..1062521 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
IMP96_RS06305 (IMP96_06305)	ygbL	1062526..1063164 (-)	639	WP_001278994.1	aldolase	-
IMP96_RS06310 (IMP96_06310)	otnK	1063161..1064423 (-)	1263	WP_086676129.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=434944 IMP96_RS06290 WP_000081550.1 1059206..1060198(+) (rpoS) [Escherichia coli strain Res13-Lact-PEB14-36]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=434944 IMP96_RS06290 WP_000081550.1 1059206..1060198(+) (rpoS) [Escherichia coli strain Res13-Lact-PEB14-36]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715