Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SMUGS5_RS01255 Genome accession   NC_018089
Coordinates   254683..256659 (+) Length   658 a.a.
NCBI ID   WP_014834814.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 249683..261659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS01240 (SMUGS5_01150) comB/nlmE 249696..250598 (+) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  SMUGS5_RS01245 (SMUGS5_01155) - 250971..252638 (+) 1668 WP_002263525.1 BglG family transcription antiterminator -
  SMUGS5_RS01250 (SMUGS5_01160) ulaG 253218..254309 (+) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  SMUGS5_RS01255 (SMUGS5_01165) recP/tkt 254683..256659 (+) 1977 WP_014834814.1 transketolase Machinery gene
  SMUGS5_RS01260 (SMUGS5_01170) - 257219..258187 (+) 969 WP_042899547.1 helix-turn-helix domain-containing protein -
  SMUGS5_RS01265 (SMUGS5_01175) - 258429..258941 (+) 513 WP_002280497.1 HXXEE domain-containing protein -
  SMUGS5_RS01270 (SMUGS5_01180) - 259017..259469 (+) 453 WP_002280498.1 LytTR family DNA-binding domain-containing protein -
  SMUGS5_RS01275 (SMUGS5_01185) - 259469..259852 (+) 384 WP_002263531.1 hypothetical protein -
  SMUGS5_RS01280 (SMUGS5_01190) - 259870..260844 (+) 975 WP_002268964.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71003.50 Da        Isoelectric Point: 4.7394

>NTDB_id=43487 SMUGS5_RS01255 WP_014834814.1 254683..256659(+) (recP/tkt) [Streptococcus mutans GS-5]
MSDLSVNAIRFLGVDAIEKSKSGHPGVVMGAAPMAYSLYTKHLRVNPSQPNWINRDRFVLSAGHGSMLLYALLHLSGFED
ISIDEIKNFRQWGSKTPGHPEYGHTVGVDVTTGPLGQGISMAVGLAQAERFLAAKYNREGYPIFDHYTYVIAGDGDFMEG
VSGEASSYAAKQNLDKLIVLYDSNDICLDGETNDAFTESVRARYDAYGWHTILVEDGNNIEAIGLAIEEAKAAGKPSLIE
IKTVIGYGAPTKGGTNAVHGAPLGAEEAAATRKALNWGYAPFEVPQEVYDDFKENVADRGEAAYDAWSNLVGEYRQAYPK
EAREVDAIIDGKDPVEIKEADFPVYENGFSQATRNSSQDAINAAADVLPNFLGGSADLAHSNMTYIKADGLQDADHPLNR
NIQFGVREFAMGTVLNGMALHGGLRVYGGTFFVFSDYLKAAVRLSALQGVPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
ATPNLVVFRPADARETQAAWHYALTSQNTPTALVLTRQNLDVEAGSSFTSVAKGAYVTYETDSDFNTILLASGSEVNLAV
KAAKELEAQGEKVRVVSVPSTELFDEQSAAYKEAILPNSVRRRVAIEMAASQPWYKYVGLDGAVIGIDKFGASAPAAQVI
ENYGFTVDNVVKVVKGLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=43487 SMUGS5_RS01255 WP_014834814.1 254683..256659(+) (recP/tkt) [Streptococcus mutans GS-5]
ATGTCAGATTTATCGGTTAATGCCATTCGCTTTTTAGGGGTAGATGCTATTGAAAAGTCTAAGTCAGGTCACCCGGGTGT
TGTCATGGGCGCTGCCCCAATGGCTTACAGTCTATATACTAAGCATTTACGTGTTAACCCAAGTCAGCCAAATTGGATTA
ACCGTGACCGTTTTGTTTTGTCAGCTGGTCATGGCTCAATGCTTTTATATGCTCTCTTGCACTTGTCGGGATTTGAAGAT
ATTTCTATTGATGAAATCAAAAATTTCCGTCAGTGGGGCTCTAAAACACCGGGGCACCCTGAGTATGGCCATACCGTAGG
TGTTGATGTGACAACAGGCCCTCTTGGCCAAGGGATTTCAATGGCTGTTGGTTTGGCTCAAGCTGAACGTTTCTTAGCTG
CTAAATACAATCGTGAAGGCTACCCTATTTTTGATCACTATACTTATGTTATTGCCGGTGATGGTGATTTTATGGAAGGT
GTTTCTGGCGAAGCGTCATCCTATGCTGCCAAACAAAATTTGGATAAACTGATTGTTCTTTATGATTCTAATGATATTTG
TTTGGATGGTGAAACCAATGATGCGTTCACTGAAAGTGTTCGTGCACGATATGATGCTTATGGATGGCATACAATCTTAG
TTGAAGATGGCAATAATATTGAAGCTATTGGACTTGCTATTGAAGAAGCAAAGGCAGCTGGCAAACCTTCTCTTATTGAA
ATTAAAACTGTGATTGGCTACGGTGCTCCAACTAAAGGCGGTACCAATGCTGTTCATGGTGCACCACTTGGAGCTGAAGA
AGCAGCTGCTACTCGTAAGGCTCTCAATTGGGGTTATGCTCCTTTTGAAGTTCCTCAAGAGGTTTATGATGATTTCAAAG
AAAATGTTGCGGATCGTGGTGAAGCTGCTTACGATGCTTGGTCAAATCTTGTTGGAGAATATCGACAAGCTTATCCTAAA
GAGGCGCGTGAAGTGGATGCAATTATTGATGGAAAAGATCCTGTGGAAATCAAAGAAGCTGATTTTCCAGTCTACGAAAA
TGGTTTCTCTCAAGCAACGCGTAATTCTAGTCAAGATGCCATCAATGCTGCGGCAGACGTACTACCTAACTTTCTTGGAG
GATCTGCTGATCTTGCGCATTCTAACATGACTTACATTAAAGCAGATGGGCTTCAAGATGCTGATCATCCGCTTAACCGT
AACATCCAGTTTGGTGTTCGTGAATTTGCTATGGGTACTGTCTTAAATGGTATGGCTCTTCATGGCGGACTGCGTGTTTA
TGGCGGTACCTTCTTTGTCTTTTCAGACTATCTCAAAGCAGCTGTTCGTTTGTCAGCCCTTCAAGGAGTACCAGTAACTT
ATGTCTTTACCCACGATTCGATTGCCGTTGGTGAAGATGGCCCTACTCATGAACCGATTGAACACTTGGCAGGTTTACGT
GCCACTCCTAATTTGGTTGTTTTTCGCCCAGCTGATGCACGCGAAACACAGGCAGCATGGCATTATGCTTTGACAAGCCA
AAACACACCAACAGCTCTTGTTTTGACACGTCAAAATCTTGATGTTGAAGCTGGTTCAAGCTTTACTTCAGTTGCTAAGG
GAGCTTATGTTACTTATGAAACAGATTCTGACTTTAATACCATTCTTTTGGCATCAGGTTCTGAAGTTAACTTAGCAGTC
AAAGCAGCTAAGGAATTGGAAGCACAAGGCGAAAAAGTACGTGTTGTTTCTGTTCCTTCTACAGAGCTCTTTGATGAGCA
ATCTGCTGCCTACAAAGAAGCTATTTTGCCAAATTCAGTACGCCGTCGTGTAGCCATTGAAATGGCAGCCAGCCAACCAT
GGTATAAATATGTTGGTCTTGATGGTGCGGTTATCGGCATTGATAAATTTGGAGCATCAGCTCCTGCTGCTCAAGTCATT
GAAAATTATGGCTTTACAGTAGATAATGTGGTTAAAGTTGTTAAGGGACTGAAATAG

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(546-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

79.3

99.848

0.792