Detailed information NTG0434864

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IMP99_RS05455
• Genome accession: NZ_CP062855
• Coordinates: 1120279..1121271 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O20:H12 strain Res13-Lact-PEB17-18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1115279..1126271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMP99_RS05425 (IMP99_05420)	ispD	1115340..1116050 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IMP99_RS05430 (IMP99_05425)	ispF	1116050..1116529 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IMP99_RS05435 (IMP99_05430)	truD	1116526..1117575 (+)	1050	WP_047669413.1	tRNA pseudouridine(13) synthase TruD	-
IMP99_RS05440 (IMP99_05435)	surE	1117556..1118317 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IMP99_RS05445 (IMP99_05440)	pcm	1118311..1118937 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IMP99_RS05450 (IMP99_05445)	nlpD	1119122..1120216 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IMP99_RS05455 (IMP99_05450)	rpoS	1120279..1121271 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IMP99_RS05460 (IMP99_05455)	ygbN	1121365..1122729 (-)	1365	WP_000104456.1	GntP family transporter	-
IMP99_RS05465 (IMP99_05460)	ygbM	1122818..1123594 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IMP99_RS05470 (IMP99_05465)	ygbL	1123599..1124237 (-)	639	WP_001278994.1	aldolase	-
IMP99_RS05475 (IMP99_05470)	otnK	1124234..1125496 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=434864 IMP99_RS05455 WP_000081550.1 1120279..1121271(+) (rpoS) [Escherichia coli O20:H12 strain Res13-Lact-PEB17-18]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=434864 IMP99_RS05455 WP_000081550.1 1120279..1121271(+) (rpoS) [Escherichia coli O20:H12 strain Res13-Lact-PEB17-18]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715