Detailed information NTG0434787

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IMQ02_RS04865
• Genome accession: NZ_CP062853
• Coordinates: 1019977..1020969 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O9:H10 strain Res13-Lact-PEB20-37-A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1014977..1025969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMQ02_RS04835 (IMQ02_04835)	ispD	1015038..1015748 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IMQ02_RS04840 (IMQ02_04840)	ispF	1015748..1016227 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IMQ02_RS04845 (IMQ02_04845)	truD	1016224..1017273 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
IMQ02_RS04850 (IMQ02_04850)	surE	1017254..1018015 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IMQ02_RS04855 (IMQ02_04855)	pcm	1018009..1018635 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IMQ02_RS04860 (IMQ02_04860)	nlpD	1018820..1019914 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IMQ02_RS04865 (IMQ02_04865)	rpoS	1019977..1020969 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IMQ02_RS04870 (IMQ02_04870)	ygbN	1021063..1022427 (-)	1365	WP_000104459.1	GntP family transporter	-
IMQ02_RS04875 (IMQ02_04875)	ygbM	1022516..1023291 (-)	776	Protein_971	HPr family phosphocarrier protein	-
IMQ02_RS04880 (IMQ02_04880)	ygbL	1023296..1023934 (-)	639	WP_001278994.1	aldolase	-
IMQ02_RS04885 (IMQ02_04885)	otnK	1023931..1025193 (-)	1263	WP_000590390.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=434787 IMQ02_RS04865 WP_000081550.1 1019977..1020969(+) (rpoS) [Escherichia coli O9:H10 strain Res13-Lact-PEB20-37-A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=434787 IMQ02_RS04865 WP_000081550.1 1019977..1020969(+) (rpoS) [Escherichia coli O9:H10 strain Res13-Lact-PEB20-37-A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715