Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HC168_RS01905 Genome accession   NZ_CP050789
Coordinates   382163..383602 (+) Length   479 a.a.
NCBI ID   WP_139745550.1    Uniprot ID   -
Organism   Aeromonas media strain FiBL-4043     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377163..388602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC168_RS01875 (HC168_01870) mlaF 377741..378541 (-) 801 WP_025328535.1 phospholipid ABC transporter ATP-binding protein MlaF -
  HC168_RS01880 (HC168_01875) - 378748..379743 (+) 996 WP_303807091.1 KpsF/GutQ family sugar-phosphate isomerase -
  HC168_RS01885 (HC168_01880) kdsC 379743..380297 (+) 555 WP_168235948.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HC168_RS01890 (HC168_01885) lptC 380294..380854 (+) 561 WP_404835779.1 LPS export ABC transporter periplasmic protein LptC -
  HC168_RS01895 (HC168_01890) lptA 380841..381359 (+) 519 WP_025328531.1 lipopolysaccharide transport periplasmic protein LptA -
  HC168_RS01900 (HC168_01895) lptB 381372..382097 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  HC168_RS01905 (HC168_01900) rpoN/rpoN1 382163..383602 (+) 1440 WP_139745550.1 RNA polymerase factor sigma-54 Machinery gene
  HC168_RS01910 (HC168_01905) hpf 383623..383910 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  HC168_RS01915 (HC168_01910) ptsN 383913..384359 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HC168_RS01920 (HC168_01915) rapZ 384400..385266 (+) 867 WP_182787433.1 RNase adapter RapZ -
  HC168_RS01925 (HC168_01920) npr 385287..385559 (+) 273 WP_005331359.1 PTS phosphocarrier protein NPr -
  HC168_RS01930 (HC168_01925) - 385578..387482 (-) 1905 WP_404835780.1 BglG family transcription antiterminator -
  HC168_RS01935 (HC168_01930) - 387589..388329 (-) 741 WP_303807066.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53792.76 Da        Isoelectric Point: 4.4177

>NTDB_id=434748 HC168_RS01905 WP_139745550.1 382163..383602(+) (rpoN/rpoN1) [Aeromonas media strain FiBL-4043]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSPIEPQDASQLDSSDAMAQDKMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGTKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=434748 HC168_RS01905 WP_139745550.1 382163..383602(+) (rpoN/rpoN1) [Aeromonas media strain FiBL-4043]
ATGAAGCCGACATTACAGTTGCGCCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAATAACCCCTTGCTGGAGCAGGAGGAGAATGAGG
CGCAGGAAACCAGCCCGATAGAGCCCCAGGACGCCAGTCAACTCGACTCCAGCGACGCCATGGCGCAGGACAAGATGCCG
GATGAACTGCCGGTGGACACCACCTGGGATGAGGTCTACTCCGCCGGTACGGCCCAGAGCGCCGGCCCCATCCATGATGG
GGAAGACAGTGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTGACGCCGTTCA
GCGATCTGGATGCCGCCATCGCCCTCGCCATCATCGATGCCATCGATGAGTCCGGCTACCTGACCGTCTCTCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGTGAAGAGGTAGAAGTTGAACTGGATGAAGTGGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTTGGCATAGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTTGGCCAGTACTCGCCGGATCTGCCCT
GGCTCAATGAGGCAAGGGAGGTGATCCGCGAGCACATGGATCTGCTCGGCAACCGCGACTACCGCACCCTGGCACGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGAGACCCGGCAATGGCATCAT
CCAGAGTGAATCGCAATACGTGATCCCGGACGTCTCCGTGGTCAAGAAGGGGACTAAGTGGGTGGTTGAGCTCAACCCGG
ATTCGGCGCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCACGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGCTCCCATCTGCAGGAAGCCAAATGGTTCATCAAGAGCCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATAGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCCG
AGGCGGTGGAGATGCACGAGTCGACGATTTCACGGGTGACGACCCAGAAGTACATGCATACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCCGAAAACCCGGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.471

100

0.495