Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMQ03_RS08270 Genome accession   NZ_CP062851
Coordinates   1764781..1766208 (-) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli O9:H10 strain Res13-Lact-PEB21-38-A     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759781..1771208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ03_RS08240 (IMQ03_08245) yeeZ 1759836..1760660 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IMQ03_RS08245 (IMQ03_08250) yeeY 1760706..1761635 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  IMQ03_RS08250 (IMQ03_08255) yoeI 1761850..1761912 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMQ03_RS08255 (IMQ03_08260) plaP 1761902..1763260 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMQ03_RS08260 (IMQ03_08265) tsuA 1763439..1764497 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  IMQ03_RS08265 (IMQ03_08270) tsuB 1764511..1764738 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMQ03_RS08270 (IMQ03_08275) sbcB 1764781..1766208 (-) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  IMQ03_RS08275 (IMQ03_08280) dacD 1766417..1767583 (+) 1167 WP_001565638.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMQ03_RS08280 (IMQ03_08285) sbmC 1767702..1768175 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  IMQ03_RS08285 (IMQ03_08290) yeeA 1768373..1769431 (+) 1059 WP_001200895.1 FUSC family protein -
  IMQ03_RS08290 (IMQ03_08295) tmaR 1769603..1769932 (+) 330 WP_000450409.1 DUF496 family protein -
  IMQ03_RS23260 - 1770033..1770350 (-) 318 WP_251122123.1 EutP/PduV family microcompartment system protein -
  IMQ03_RS23110 - 1770669..1771040 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=434720 IMQ03_RS08270 WP_000980603.1 1764781..1766208(-) (sbcB) [Escherichia coli O9:H10 strain Res13-Lact-PEB21-38-A]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=434720 IMQ03_RS08270 WP_000980603.1 1764781..1766208(-) (sbcB) [Escherichia coli O9:H10 strain Res13-Lact-PEB21-38-A]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCATCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581