Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HC170_RS19765 Genome accession   NZ_CP050786
Coordinates   4216765..4218204 (-) Length   479 a.a.
NCBI ID   WP_041204880.1    Uniprot ID   -
Organism   Aeromonas media strain DSM 4881     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4211765..4223204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC170_RS19735 (HC170_19605) degS 4212508..4213629 (+) 1122 WP_041204883.1 outer membrane-stress sensor serine endopeptidase DegS -
  HC170_RS19740 (HC170_19610) - 4213732..4214789 (+) 1058 Protein_3810 PTS sugar transporter subunit IIA -
  HC170_RS19745 (HC170_19615) npr 4214808..4215080 (-) 273 WP_005331359.1 PTS phosphocarrier protein NPr -
  HC170_RS19750 (HC170_19620) rapZ 4215101..4215967 (-) 867 WP_041204881.1 RNase adapter RapZ -
  HC170_RS19755 (HC170_19625) ptsN 4216008..4216454 (-) 447 WP_005331355.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HC170_RS19760 (HC170_19630) hpf 4216457..4216744 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  HC170_RS19765 (HC170_19635) rpoN/rpoN1 4216765..4218204 (-) 1440 WP_041204880.1 RNA polymerase factor sigma-54 Machinery gene
  HC170_RS19770 (HC170_19640) lptB 4218270..4218995 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  HC170_RS19775 (HC170_19645) lptA 4219008..4219526 (-) 519 WP_042649049.1 lipopolysaccharide transport periplasmic protein LptA -
  HC170_RS19780 (HC170_19650) lptC 4219513..4220073 (-) 561 WP_042649050.1 LPS export ABC transporter periplasmic protein LptC -
  HC170_RS19785 (HC170_19655) kdsC 4220070..4220624 (-) 555 WP_042649051.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HC170_RS19790 (HC170_19660) - 4220624..4221619 (-) 996 WP_025328534.1 KpsF/GutQ family sugar-phosphate isomerase -
  HC170_RS19795 (HC170_19665) mlaF 4221826..4222626 (+) 801 WP_025328535.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53771.74 Da        Isoelectric Point: 4.4457

>NTDB_id=434713 HC170_RS19765 WP_041204880.1 4216765..4218204(-) (rpoN/rpoN1) [Aeromonas media strain DSM 4881]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAHETSPIEPQDASQLDSSDAMAQDKMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGAKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=434713 HC170_RS19765 WP_041204880.1 4216765..4218204(-) (rpoN/rpoN1) [Aeromonas media strain DSM 4881]
ATGAAGCCGACATTACAGTTGCGTCTCGGCCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAATAACCCCTTGCTGGAGCAGGAGGAGAATGAGG
CGCACGAAACCAGTCCGATAGAGCCCCAGGACGCCAGTCAACTCGACTCCAGTGACGCAATGGCACAGGACAAGATGCCG
GATGAACTGCCGGTGGACACTACCTGGGATGAGGTCTATTCCGCTGGCACGGCTCAGAGCGCTGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAAACCACCGAAAATCTGCAGGATTATCTGTTGTGGCAGATGCGACTGACGCCGTTCA
GTGATCTGGATGCCGCGATTGCCCTCGCCATCATCGATGCCATCGATGAGTCTGGCTACCTGACCGTTTCTCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGTGAAGAGGTAGAAGTTGAACTGGATGAAGTGGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTTGGCATCGCCGCTCGCTCGGTACAGGAGTGTCTGTTGATCCAGCTTGGCCAGTATTCGCCGGATCTGCCCT
GGCTCAATGAGGCAAGGGAGGTGATCCGCGAGCACATGGACTTGCTCGGCAACCGTGACTACCGCACCCTGGCGCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTACTGGATCTCATCCAGCAGCTGGAGCCCAGACCCGGTAATGGCATCAT
CCAGAGCGAATCGCAATACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGGGCGAAGTGGGTGGTTGAACTCAACCCGG
ATTCGGCGCCGCGCATTCGTGTCAACGAGGCCTATGCGGCAATGGCACGCAATGCCCGCAGCAGCACGGATACTCAGTTC
ATTCGTTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGAAACGACACCCTGCTCAAGGTGGCAAG
CTGCATAGTCGAGCAGCAACAGGGTTTCTTCGAGTACGGTGAAGAGGCCATGAAGCCCATGGTACTCAACGACATCGCCG
AGGCGGTGGAGATGCACGAGTCGACGATTTCACGGGTGACGACCCAGAAGTACATGCATACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCCGAAAACCCGGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.667

100

0.497