Detailed information NTG0434707

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IMQ03_RS04860
• Genome accession: NZ_CP062851
• Coordinates: 1019976..1020968 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O9:H10 strain Res13-Lact-PEB21-38-A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1014976..1025968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMQ03_RS04830 (IMQ03_04830)	ispD	1015037..1015747 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IMQ03_RS04835 (IMQ03_04835)	ispF	1015747..1016226 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IMQ03_RS04840 (IMQ03_04840)	truD	1016223..1017272 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
IMQ03_RS04845 (IMQ03_04845)	surE	1017253..1018014 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IMQ03_RS04850 (IMQ03_04850)	pcm	1018008..1018634 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IMQ03_RS04855 (IMQ03_04855)	nlpD	1018819..1019913 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IMQ03_RS04860 (IMQ03_04860)	rpoS	1019976..1020968 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IMQ03_RS04865 (IMQ03_04865)	ygbN	1021062..1022426 (-)	1365	WP_000104459.1	GntP family transporter	-
IMQ03_RS04870 (IMQ03_04870)	ygbM	1022515..1023290 (-)	776	Protein_971	HPr family phosphocarrier protein	-
IMQ03_RS04875 (IMQ03_04875)	ygbL	1023295..1023933 (-)	639	WP_001278994.1	aldolase	-
IMQ03_RS04880 (IMQ03_04880)	otnK	1023930..1025192 (-)	1263	WP_000590390.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=434707 IMQ03_RS04860 WP_000081550.1 1019976..1020968(+) (rpoS) [Escherichia coli O9:H10 strain Res13-Lact-PEB21-38-A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=434707 IMQ03_RS04860 WP_000081550.1 1019976..1020968(+) (rpoS) [Escherichia coli O9:H10 strain Res13-Lact-PEB21-38-A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715