Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IMQ31_RS16470 Genome accession   NZ_CP062824
Coordinates   3503362..3504039 (-) Length   225 a.a.
NCBI ID   WP_085459089.1    Uniprot ID   -
Organism   Escherichia coli O167:H26 strain Res13-Lact-PER13-34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3498362..3509039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ31_RS16455 (IMQ31_16465) chiA 3499720..3502422 (+) 2703 WP_085459090.1 bifunctional chitinase/lysozyme -
  IMQ31_RS16460 (IMQ31_16470) bfd 3502591..3502785 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  IMQ31_RS16465 (IMQ31_16475) bfr 3502857..3503333 (+) 477 WP_000675504.1 bacterioferritin -
  IMQ31_RS16470 (IMQ31_16480) pilD 3503362..3504039 (-) 678 WP_085459089.1 prepilin peptidase GspO Machinery gene
  IMQ31_RS16475 (IMQ31_16485) gspM 3504039..3504500 (-) 462 WP_001600566.1 type II secretion system protein GspM -
  IMQ31_RS16480 (IMQ31_16490) gspL 3504497..3505660 (-) 1164 WP_085459088.1 type II secretion system protein GspL -
  IMQ31_RS16485 (IMQ31_16495) gspK 3505675..3506658 (-) 984 WP_085459087.1 type II secretion system minor pseudopilin GspK -
  IMQ31_RS16490 (IMQ31_16500) gspJ 3506651..3507238 (-) 588 WP_000610635.1 type II secretion system minor pseudopilin GspJ -
  IMQ31_RS16495 (IMQ31_16505) gspI 3507231..3507608 (-) 378 WP_001041741.1 type II secretion system minor pseudopilin GspI -
  IMQ31_RS16500 (IMQ31_16510) gspH 3507605..3508114 (-) 510 WP_001076032.1 type II secretion system minor pseudopilin GspH -
  IMQ31_RS16505 (IMQ31_16515) gspG 3508122..3508559 (-) 438 WP_001202877.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24936.82 Da        Isoelectric Point: 7.9563

>NTDB_id=434417 IMQ31_RS16470 WP_085459089.1 3503362..3504039(-) (pilD) [Escherichia coli O167:H26 strain Res13-Lact-PER13-34]
MTMLLPLFILVGFMAGYFVNAMAYHLSPLEDKTALTFRQVLIHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWTSY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=434417 IMQ31_RS16470 WP_085459089.1 3503362..3504039(-) (pilD) [Escherichia coli O167:H26 strain Res13-Lact-PER13-34]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATGGCAGGTTATTTTGTTAATGCTATGGCCTATCACCTCTC
GCCTTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGATTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGCGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTTCTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGACCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

33.333

100

0.382