Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMQ31_RS00550 Genome accession   NZ_CP062824
Coordinates   113722..115149 (-) Length   475 a.a.
NCBI ID   WP_085458847.1    Uniprot ID   -
Organism   Escherichia coli O167:H26 strain Res13-Lact-PER13-34     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108722..120149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ31_RS00520 (IMQ31_00520) yeeZ 108777..109601 (+) 825 WP_085458849.1 SDR family oxidoreductase -
  IMQ31_RS00525 (IMQ31_00525) yeeY 109647..110576 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IMQ31_RS00530 (IMQ31_00530) yoeI 110791..110853 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMQ31_RS00535 (IMQ31_00535) plaP 110843..112201 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMQ31_RS00540 (IMQ31_00540) tsuA 112380..113438 (+) 1059 WP_085458848.1 thiosulfate utilization transporter TsuA/YeeE -
  IMQ31_RS00545 (IMQ31_00545) tsuB 113452..113679 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMQ31_RS00550 (IMQ31_00550) sbcB 113722..115149 (-) 1428 WP_085458847.1 exodeoxyribonuclease I Machinery gene
  IMQ31_RS00555 (IMQ31_00555) dacD 115358..116524 (+) 1167 WP_085458846.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMQ31_RS00560 (IMQ31_00560) sbmC 116643..117116 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  IMQ31_RS00565 (IMQ31_00565) yeeA 117315..118373 (+) 1059 WP_001200877.1 FUSC family protein -
  IMQ31_RS00570 (IMQ31_00570) tmaR 118545..118874 (+) 330 WP_000450409.1 DUF496 family protein -
  IMQ31_RS00575 (IMQ31_00575) - 118975..119418 (-) 444 WP_001189433.1 EutP/PduV family microcompartment system protein -
  IMQ31_RS00580 (IMQ31_00580) pduU 119423..119773 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54446.77 Da        Isoelectric Point: 5.6225

>NTDB_id=434362 IMQ31_RS00550 WP_085458847.1 113722..115149(-) (sbcB) [Escherichia coli O167:H26 strain Res13-Lact-PER13-34]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQRDNSRWDLLDVMRACYALRPEGINWPKNDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFADAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
NRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=434362 IMQ31_RS00550 WP_085458847.1 113722..115149(-) (sbcB) [Escherichia coli O167:H26 strain Res13-Lact-PER13-34]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCTGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCGTGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTAAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGACGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AATCGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-189)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.085

98.947

0.575