Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BACAU_RS17050 Genome accession   NC_016784
Coordinates   3493841..3494530 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis CAU B946     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3488841..3499530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACAU_RS17015 (BACAU_3283) fliW 3488932..3489363 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  BACAU_RS17020 (BACAU_3284) - 3489393..3489962 (-) 570 WP_024085861.1 DUF6470 family protein -
  BACAU_RS17025 (BACAU_3285) flgL 3490053..3490970 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  BACAU_RS17030 (BACAU_3286) flgK 3490982..3492499 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  BACAU_RS17035 (BACAU_3287) - 3492515..3492997 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BACAU_RS17040 (BACAU_3288) flgM 3493012..3493278 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BACAU_RS17045 (BACAU_3289) - 3493348..3493767 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  BACAU_RS17050 comFC 3493841..3494530 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  BACAU_RS17055 (BACAU_3291) - 3494536..3494820 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BACAU_RS17060 (BACAU_3292) comFA 3494878..3496263 (-) 1386 WP_014305928.1 DEAD/DEAH box helicase Machinery gene
  BACAU_RS17065 (BACAU_3293) - 3496371..3497219 (-) 849 WP_014305929.1 DegV family protein -
  BACAU_RS17070 (BACAU_3294) degU 3497317..3498006 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BACAU_RS17075 (BACAU_3295) degS 3498083..3499246 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=43436 BACAU_RS17050 WP_196616643.1 3493841..3494530(-) (comFC) [Bacillus velezensis CAU B946]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=43436 BACAU_RS17050 WP_196616643.1 3493841..3494530(-) (comFC) [Bacillus velezensis CAU B946]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment