Detailed information NTG0434300

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IMQ58_RS05250
• Genome accession: NZ_CP062815
• Coordinates: 1093241..1094233 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Res13-Sevr-PER06-05-b-A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1088241..1099233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMQ58_RS05220 (IMQ58_05225)	ispD	1088302..1089012 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IMQ58_RS05225 (IMQ58_05230)	ispF	1089012..1089491 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IMQ58_RS05230 (IMQ58_05235)	truD	1089488..1090537 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IMQ58_RS05235 (IMQ58_05240)	surE	1090518..1091279 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IMQ58_RS05240 (IMQ58_05245)	pcm	1091273..1091899 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IMQ58_RS05245 (IMQ58_05250)	nlpD	1092084..1093178 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IMQ58_RS05250 (IMQ58_05255)	rpoS	1093241..1094233 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IMQ58_RS05255 (IMQ58_05260)	ygbN	1094327..1095691 (-)	1365	WP_000104459.1	GntP family transporter	-
IMQ58_RS05260 (IMQ58_05265)	ygbM	1095780..1096556 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IMQ58_RS05265 (IMQ58_05270)	ygbL	1096561..1097199 (-)	639	WP_001278994.1	aldolase	-
IMQ58_RS05270 (IMQ58_05275)	otnK	1097196..1098458 (-)	1263	WP_195686532.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=434300 IMQ58_RS05250 WP_000081550.1 1093241..1094233(+) (rpoS) [Escherichia coli strain Res13-Sevr-PER06-05-b-A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=434300 IMQ58_RS05250 WP_000081550.1 1093241..1094233(+) (rpoS) [Escherichia coli strain Res13-Sevr-PER06-05-b-A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715