Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PADK2_RS18035 Genome accession   NC_018080
Coordinates   3897395..3897991 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa DK2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3892395..3902991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PADK2_RS31630 - 3892741..3892938 (-) 198 Protein_3601 TetR family transcriptional regulator -
  PADK2_RS18015 (PADK2_18030) - 3893031..3894614 (+) 1584 WP_004342641.1 flavin-containing monooxygenase -
  PADK2_RS18020 (PADK2_18035) - 3894611..3895498 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  PADK2_RS18025 (PADK2_18040) - 3895572..3896111 (+) 540 WP_003103931.1 CbrC family protein -
  PADK2_RS18030 (PADK2_18045) - 3896124..3897272 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  PADK2_RS18035 (PADK2_18050) recR 3897395..3897991 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  PADK2_RS18040 (PADK2_18055) - 3898070..3898396 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  PADK2_RS18045 dnaX 3898442..3900551 (-) 2110 Protein_3608 DNA polymerase III subunit gamma/tau -
  PADK2_RS18050 (PADK2_18070) - 3900588..3901454 (+) 867 WP_003120462.1 substrate-binding periplasmic protein -
  PADK2_RS18055 (PADK2_18075) - 3901708..3902085 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=43429 PADK2_RS18035 WP_003087237.1 3897395..3897991(-) (recR) [Pseudomonas aeruginosa DK2]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=43429 PADK2_RS18035 WP_003087237.1 3897395..3897991(-) (recR) [Pseudomonas aeruginosa DK2]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48

Multiple sequence alignment