Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BACAU_RS13030 Genome accession   NC_016784
Coordinates   2717377..2718129 (-) Length   250 a.a.
NCBI ID   WP_014305514.1    Uniprot ID   -
Organism   Bacillus velezensis CAU B946     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2712377..2723129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACAU_RS13005 (BACAU_2524) mreC 2712813..2713676 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  BACAU_RS13010 (BACAU_2525) mreB 2713707..2714720 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BACAU_RS13015 (BACAU_2526) radC 2714812..2715507 (-) 696 WP_003152646.1 RadC family protein -
  BACAU_RS13020 (BACAU_2527) - 2715539..2716108 (-) 570 WP_014305513.1 Maf family protein -
  BACAU_RS13025 (BACAU_2528) - 2716249..2717250 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  BACAU_RS13030 (BACAU_2529) comC 2717377..2718129 (-) 753 WP_014305514.1 prepilin peptidase Machinery gene
  BACAU_RS13035 (BACAU_2530) - 2718269..2719561 (-) 1293 WP_014305515.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BACAU_RS13040 (BACAU_2531) - 2719620..2722262 (-) 2643 WP_014305516.1 valine--tRNA ligase -
  BACAU_RS13045 (BACAU_2532) - 2722715..2722906 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27124.75 Da        Isoelectric Point: 9.2521

>NTDB_id=43427 BACAU_RS13030 WP_014305514.1 2717377..2718129(-) (comC) [Bacillus velezensis CAU B946]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLALIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=43427 BACAU_RS13030 WP_014305514.1 2717377..2718129(-) (comC) [Bacillus velezensis CAU B946]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGTTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGCGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment