Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMQ59_RS09175 Genome accession   NZ_CP062811
Coordinates   1930276..1931703 (-) Length   475 a.a.
NCBI ID   WP_001537223.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Sevr-PER07-33     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1925276..1936703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ59_RS09145 (IMQ59_09145) yeeZ 1925331..1926155 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IMQ59_RS09150 (IMQ59_09150) yeeY 1926201..1927130 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  IMQ59_RS09155 (IMQ59_09155) yoeI 1927345..1927407 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMQ59_RS09160 (IMQ59_09160) plaP 1927397..1928755 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMQ59_RS09165 (IMQ59_09165) tsuA 1928934..1929992 (+) 1059 WP_024245909.1 thiosulfate utilization transporter TsuA/YeeE -
  IMQ59_RS09170 (IMQ59_09170) tsuB 1930006..1930233 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMQ59_RS09175 (IMQ59_09175) sbcB 1930276..1931703 (-) 1428 WP_001537223.1 exodeoxyribonuclease I Machinery gene
  IMQ59_RS09180 (IMQ59_09180) dacD 1931912..1933078 (+) 1167 WP_001375226.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMQ59_RS09185 (IMQ59_09185) sbmC 1933197..1933670 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  IMQ59_RS09190 (IMQ59_09190) yeeA 1933869..1934927 (+) 1059 WP_001200891.1 FUSC family protein -
  IMQ59_RS09195 (IMQ59_09195) tmaR 1935099..1935428 (+) 330 WP_000450409.1 DUF496 family protein -
  IMQ59_RS09200 (IMQ59_09200) - 1935529..1935825 (-) 297 Protein_1820 EutP/PduV family microcompartment system protein -
  IMQ59_RS09205 (IMQ59_09205) - 1935804..1936160 (+) 357 WP_001537222.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54499.83 Da        Isoelectric Point: 5.6086

>NTDB_id=434233 IMQ59_RS09175 WP_001537223.1 1930276..1931703(-) (sbcB) [Escherichia coli strain Res13-Sevr-PER07-33]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGNNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=434233 IMQ59_RS09175 WP_001537223.1 1930276..1931703(-) (sbcB) [Escherichia coli strain Res13-Sevr-PER07-33]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCTG
CGGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCTAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCAATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579