Detailed information NTG0434158

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HCU65_RS18975
• Genome accession: NZ_CP050705
• Coordinates: 3803086..3804228 (+)
• Length: 380 a.a.
• NCBI ID: WP_003326491.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain PENSV20
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3798086..3809228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HCU65_RS18955 (HCU65_19000)	-	3798551..3799252 (+)	702	WP_219946778.1	bacteriocin biosynthesis protein AlbG	-
HCU65_RS18960 (HCU65_19005)	-	3799259..3800635 (-)	1377	WP_219946779.1	YncE family protein	-
HCU65_RS18965 (HCU65_19010)	-	3800677..3802038 (-)	1362	WP_219946780.1	YncE family protein	-
HCU65_RS18970 (HCU65_19015)	-	3802321..3802875 (+)	555	WP_088118182.1	YdhK family protein	-
HCU65_RS18975 (HCU65_19020)	rapF	3803086..3804228 (+)	1143	WP_003326491.1	tetratricopeptide repeat protein	Regulator
HCU65_RS18980 (HCU65_19025)	-	3804212..3804331 (+)	120	WP_003326489.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
HCU65_RS18985 (HCU65_19030)	-	3804430..3804619 (+)	190	Protein_3742	RNA-binding protein	-
HCU65_RS18990 (HCU65_19035)	speB	3804679..3805551 (-)	873	WP_035175335.1	agmatinase	-
HCU65_RS18995 (HCU65_19040)	speE	3805612..3806442 (-)	831	WP_003326486.1	spermidine synthase	-
HCU65_RS19000 (HCU65_19045)	-	3806647..3808722 (+)	2076	WP_219946781.1	transglycosylase domain-containing protein	-
HCU65_RS19005 (HCU65_19050)	-	3808794..3808940 (-)	147	WP_003326484.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45457.24 Da
• Isoelectric Point: 5.2528

>NTDB_id=434158 HCU65_RS18975 WP_003326491.1 3803086..3804228(+) (rapF) [Bacillus atrophaeus strain PENSV20]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELAQIEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVSM
DYARQAFEIYNEQTTYGIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAEQQPQLMGRTLYNIALCKQNQHSFESA
IEYVKKSIHVFEKSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAGDNVYLMEFEFLESLYLSGPDEEAIK
KCFVFLESKMMYADIEDFALDVAKYYHQQECYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1143 bp

>NTDB_id=434158 HCU65_RS18975 WP_003326491.1 3803086..3804228(+) (rapF) [Bacillus atrophaeus strain PENSV20]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGGCTCAAATAGAAGAAGACCAGGATCTTCATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGAGGATAGAAGAACAGCCGCGACTG
TCCGATTTACTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTATTTTAATTTCTTCAGAGG
TATGTATGAGCTGGACCAGCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTGTTA
AAGATAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCCATG
GACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGGTATCAGAATGATTCAATGCCAGTCCCTGTT
TGGAGCTAACTTTTTGGACCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGGCAG
AACAGCAGCCGCAACTAATGGGAAGAACGCTTTATAATATTGCCCTTTGCAAGCAAAATCAACACAGCTTTGAATCAGCG
ATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAAAATCTAAAATGCTTCCTTCACTGCCACAAGCCTTTTTCCTAAT
TACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAGCTG
CCGGAGACAATGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAAGCAATCAAA
AAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTATCA
TCAGCAGGAATGTTATAAAAAAGCATCTACTTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGGTGA
ATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.803
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	100	0.568