Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HCU65_RS14035 Genome accession   NZ_CP050705
Coordinates   2816392..2817138 (-) Length   248 a.a.
NCBI ID   WP_219946426.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2811392..2822138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS14010 (HCU65_14045) mreC 2811788..2812660 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  HCU65_RS14015 (HCU65_14050) mreB 2812691..2813704 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  HCU65_RS14020 (HCU65_14055) radC 2813796..2814491 (-) 696 WP_219946424.1 DNA repair protein RadC -
  HCU65_RS14025 (HCU65_14060) - 2814526..2815095 (-) 570 WP_061669850.1 nucleoside triphosphate pyrophosphatase -
  HCU65_RS14030 (HCU65_14065) - 2815242..2816258 (-) 1017 WP_219946425.1 SPOR domain-containing protein -
  HCU65_RS14035 (HCU65_14070) comC 2816392..2817138 (-) 747 WP_219946426.1 A24 family peptidase Machinery gene
  HCU65_RS14040 (HCU65_14075) - 2817292..2818587 (-) 1296 WP_219946427.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HCU65_RS14045 (HCU65_14080) valS 2818645..2821287 (-) 2643 WP_219946428.1 valine--tRNA ligase -
  HCU65_RS14050 (HCU65_14085) - 2821734..2821925 (+) 192 WP_061572654.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26761.46 Da        Isoelectric Point: 9.1073

>NTDB_id=434141 HCU65_RS14035 WP_219946426.1 2816392..2817138(-) (comC) [Bacillus atrophaeus strain PENSV20]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKPRSSCSFCRHPLSYAELIPVFSFFLQKGRCKSCAQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILA
LYVKIAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=434141 HCU65_RS14035 WP_219946426.1 2816392..2817138(-) (comC) [Bacillus atrophaeus strain PENSV20]
ATGGTTTTTGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCCATTATAAAACCGCGCTCATCCTGTTCATTCTGCCGCCATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTGCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCA
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCCTTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGTGTGCTGATGTTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCTGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGTTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCTCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATCTGTACGGTGAAGAAATATTAGCA
CTCTATGTCAAAATCGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

61.943

99.597

0.617