Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HCU65_RS13075 Genome accession   NZ_CP050705
Coordinates   2642892..2643659 (-) Length   255 a.a.
NCBI ID   WP_219946365.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2637892..2648659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS13055 (HCU65_13085) - 2638050..2638862 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  HCU65_RS13060 (HCU65_13090) ccpN 2638888..2639526 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  HCU65_RS13065 (HCU65_13095) glyS 2639674..2641713 (-) 2040 WP_219946364.1 glycine--tRNA ligase subunit beta -
  HCU65_RS13070 (HCU65_13100) glyQ 2641706..2642593 (-) 888 WP_010789234.1 glycine--tRNA ligase subunit alpha -
  HCU65_RS13075 (HCU65_13105) recO 2642892..2643659 (-) 768 WP_219946365.1 DNA repair protein RecO Machinery gene
  HCU65_RS13080 (HCU65_13110) - 2643696..2643839 (-) 144 WP_004429487.1 YqzL family protein -
  HCU65_RS13085 (HCU65_13115) era 2643996..2644901 (-) 906 WP_004429485.1 GTPase Era -
  HCU65_RS13090 (HCU65_13120) - 2644882..2645292 (-) 411 WP_010789236.1 cytidine deaminase -
  HCU65_RS13095 (HCU65_13125) - 2645406..2645783 (-) 378 WP_106360521.1 diacylglycerol kinase family protein -
  HCU65_RS13100 (HCU65_13130) ybeY 2645764..2646237 (-) 474 WP_004429479.1 rRNA maturation RNase YbeY -
  HCU65_RS13105 (HCU65_13135) - 2646238..2648373 (-) 2136 WP_219946366.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29210.94 Da        Isoelectric Point: 8.5598

>NTDB_id=434133 HCU65_RS13075 WP_219946365.1 2642892..2643659(-) (recO) [Bacillus atrophaeus strain PENSV20]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGIDPDVITFIVQMKMLGIIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=434133 HCU65_RS13075 WP_219946365.1 2642892..2643659(-) (recO) [Bacillus atrophaeus strain PENSV20]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATGCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATCAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAATCGACCCCGATGTCATTACCTTCA
TCGTTCAAATGAAAATGCTGGGTATAATAGGATTGTATCCTGAACTTAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGGTTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAAGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.157

100

0.922