Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HCU65_RS12550 Genome accession   NZ_CP050705
Coordinates   2552288..2553085 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547288..2558085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS12525 (HCU65_12555) - 2547716..2548459 (-) 744 WP_061670022.1 glycerophosphodiester phosphodiesterase -
  HCU65_RS12530 (HCU65_12560) - 2548571..2549194 (-) 624 WP_003325488.1 N-acetylmuramoyl-L-alanine amidase -
  HCU65_RS12535 (HCU65_12565) - 2549217..2549519 (-) 303 WP_061670021.1 hypothetical protein -
  HCU65_RS12540 (HCU65_12570) - 2549975..2551093 (+) 1119 WP_219946331.1 NADH-dependent flavin oxidoreductase -
  HCU65_RS12545 (HCU65_12575) - 2551259..2552116 (+) 858 WP_219946332.1 manganese catalase family protein -
  HCU65_RS12550 (HCU65_12580) spo0A 2552288..2553085 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  HCU65_RS12555 (HCU65_12585) spoIVB 2553368..2554648 (-) 1281 WP_106046735.1 SpoIVB peptidase -
  HCU65_RS12560 (HCU65_12590) recN 2554843..2556573 (-) 1731 WP_003325482.1 DNA repair protein RecN Machinery gene
  HCU65_RS12565 (HCU65_12595) argR 2556608..2557057 (-) 450 WP_003325480.1 arginine repressor ArgR -
  HCU65_RS12570 (HCU65_12600) - 2557156..2558001 (-) 846 WP_061670019.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=434123 HCU65_RS12550 WP_010789174.1 2552288..2553085(-) (spo0A) [Bacillus atrophaeus strain PENSV20]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=434123 HCU65_RS12550 WP_010789174.1 2552288..2553085(-) (spo0A) [Bacillus atrophaeus strain PENSV20]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGTCTGTCTTTGTTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGATGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATTAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGTATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTACTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCCTTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974