Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HCU65_RS11500 Genome accession   NZ_CP050705
Coordinates   2344079..2344687 (+) Length   202 a.a.
NCBI ID   WP_061572999.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2339079..2349687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS11460 (HCU65_11490) - 2340188..2340694 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  HCU65_RS11465 (HCU65_11495) - 2340844..2341263 (+) 420 WP_219946254.1 Hsp20/alpha crystallin family protein -
  HCU65_RS11470 (HCU65_11500) - 2341283..2341672 (-) 390 WP_003325655.1 YppG family protein -
  HCU65_RS11475 (HCU65_11505) - 2341862..2342050 (+) 189 WP_003325653.1 YppF family protein -
  HCU65_RS11480 (HCU65_11510) - 2342081..2342455 (-) 375 WP_003325652.1 YppE family protein -
  HCU65_RS11485 (HCU65_11515) - 2342497..2342742 (-) 246 WP_003325651.1 DUF5446 family protein -
  HCU65_RS11490 (HCU65_11520) sspM 2342943..2343047 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  HCU65_RS11495 (HCU65_11525) - 2343074..2344036 (-) 963 WP_106033547.1 DUF2515 domain-containing protein -
  HCU65_RS11500 (HCU65_11530) recU 2344079..2344687 (+) 609 WP_061572999.1 Holliday junction resolvase RecU Machinery gene
  HCU65_RS11505 (HCU65_11535) - 2344725..2347478 (+) 2754 WP_219946255.1 PBP1A family penicillin-binding protein -
  HCU65_RS11510 (HCU65_11540) - 2347570..2348061 (-) 492 WP_219946256.1 YpoC family protein -
  HCU65_RS11515 (HCU65_11545) nth 2348058..2348717 (-) 660 WP_003325645.1 endonuclease III -
  HCU65_RS11520 (HCU65_11550) dnaD 2348736..2349434 (-) 699 WP_003325644.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23607.90 Da        Isoelectric Point: 9.8392

>NTDB_id=434122 HCU65_RS11500 WP_061572999.1 2344079..2344687(+) (recU) [Bacillus atrophaeus strain PENSV20]
MIRYPNGKTFQPKKTVSSQSRHKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=434122 HCU65_RS11500 WP_061572999.1 2344079..2344687(+) (recU) [Bacillus atrophaeus strain PENSV20]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAGCAGGCATAAAAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAATCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.552

99.505

0.891