Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HCU65_RS08080 Genome accession   NZ_CP050705
Coordinates   1571386..1571664 (+) Length   92 a.a.
NCBI ID   WP_003329146.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566386..1576664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS08060 (HCU65_08080) - 1567580..1568494 (+) 915 WP_219947554.1 ketopantoate reductase family protein -
  HCU65_RS08065 (HCU65_08085) - 1568526..1569758 (-) 1233 WP_010788481.1 aminopeptidase -
  HCU65_RS08070 (HCU65_08090) - 1569860..1569994 (-) 135 WP_010788482.1 protein YkpC -
  HCU65_RS08075 (HCU65_08095) mreBH 1570096..1571103 (-) 1008 WP_061670906.1 cell shape-determining protein MreBH -
  HCU65_RS08080 (HCU65_08100) abrB 1571386..1571664 (+) 279 WP_003329146.1 transcriptional regulator AbhA Regulator
  HCU65_RS08085 (HCU65_08105) - 1571876..1573162 (+) 1287 WP_003329145.1 ATP-binding protein -
  HCU65_RS08090 (HCU65_08110) - 1573175..1574014 (+) 840 WP_003329144.1 gamma-glutamylcyclotransferase -
  HCU65_RS08095 (HCU65_08115) ktrC 1574064..1574729 (+) 666 WP_010788485.1 Ktr system potassium transporter KtrC -
  HCU65_RS08100 (HCU65_08120) ade 1574899..1576626 (+) 1728 WP_061670709.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.03 Da        Isoelectric Point: 6.9804

>NTDB_id=434117 HCU65_RS08080 WP_003329146.1 1571386..1571664(+) (abrB) [Bacillus atrophaeus strain PENSV20]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGVCLMTGEITTENKEYGNGKIILSPEGAQ
QLLDEIQAALKA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=434117 HCU65_RS08080 WP_003329146.1 1571386..1571664(+) (abrB) [Bacillus atrophaeus strain PENSV20]
ATGAAATCAATTGGTGTTGTAAGAAAAGTAGATGAACTTGGCCGTATTGTTATGCCGATAGAATTAAGAAGAGCGTTAGA
TATTGCGATTAAAGACAGTATTGAGTTCTTTGTAGACGGAGATAAAATCGTCTTGAAAAAATATAAGCCGCACGGCGTGT
GTTTAATGACAGGGGAAATTACGACAGAAAATAAAGAATACGGAAATGGAAAAATCATTTTAAGTCCAGAAGGCGCACAG
CAGCTGCTTGACGAAATTCAAGCTGCTTTAAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576