Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   HCU65_RS07960 Genome accession   NZ_CP050705
Coordinates   1547014..1547589 (+) Length   191 a.a.
NCBI ID   WP_003327252.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542014..1552589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS07930 (HCU65_07950) dapD 1542135..1542845 (+) 711 WP_003327258.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  HCU65_RS07935 (HCU65_07955) - 1542918..1544042 (+) 1125 WP_219947549.1 N-acetyldiaminopimelate deacetylase -
  HCU65_RS07940 (HCU65_07960) - 1544103..1544348 (+) 246 WP_003327256.1 YkuS family protein -
  HCU65_RS07945 (HCU65_07965) - 1544387..1545190 (-) 804 WP_003327255.1 mechanosensitive ion channel family protein -
  HCU65_RS07950 (HCU65_07970) ahpA 1545440..1545982 (+) 543 WP_003327254.1 biofilm-specific peroxidase AhpA -
  HCU65_RS07955 (HCU65_07975) - 1546067..1546525 (+) 459 WP_003327253.1 TlpA disulfide reductase family protein -
  HCU65_RS07960 (HCU65_07980) rok 1547014..1547589 (+) 576 WP_003327252.1 transcriptional regulator Rok Regulator
  HCU65_RS07965 (HCU65_07985) - 1547635..1548594 (-) 960 WP_003327251.1 hypothetical protein -
  HCU65_RS07970 (HCU65_07990) - 1548738..1549322 (+) 585 WP_106034174.1 molybdenum cofactor guanylyltransferase -
  HCU65_RS07975 (HCU65_07995) - 1549394..1550413 (+) 1020 WP_088117081.1 MoeB/ThiF family adenylyltransferase -
  HCU65_RS07980 (HCU65_08000) glp 1550433..1551725 (+) 1293 WP_219947550.1 gephyrin-like molybdotransferase Glp -
  HCU65_RS07985 (HCU65_08005) mobB 1551686..1552210 (+) 525 WP_219947551.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21713.65 Da        Isoelectric Point: 9.8783

>NTDB_id=434116 HCU65_RS07960 WP_003327252.1 1547014..1547589(+) (rok) [Bacillus atrophaeus strain PENSV20]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSSAAETKKDFRPERKSESLPVLAELAAQEIRSYQPQ
QASQPQPQSISSIPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQSL
IKMYPEVKKPYRGQYILEGEIASDSAENVTE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=434116 HCU65_RS07960 WP_003327252.1 1547014..1547589(+) (rok) [Bacillus atrophaeus strain PENSV20]
ATGTTTAATGAGAGGGAAGCTTTACGCTTGCGTTTGGAACAGTTAAATGAGGCTGAGGTTAAAGTCATCCGTGAATATCA
AATAGAGCGTGACAAAATATATGCAAAACTAAGAGAGCTTGACCGCAATGGAAGCTCAGCAGCGGAAACAAAAAAAGATT
TTCGCCCTGAAAGAAAAAGTGAGTCTCTTCCTGTGCTAGCCGAGCTCGCAGCACAAGAGATCAGAAGCTATCAGCCGCAG
CAGGCATCACAGCCGCAGCCGCAATCCATCTCCTCTATTCCGGCGGGTATTCCGGACGGAACGACAAGAAGAAGAAGAGG
AACGGCAAGACCGGGTTCAAAGGCAGCAAAGCTTCGTGAAGCGGCAATCAAAACATTAAAACGCCATAACGCAGCGATCA
AAAGCTCCGAACTTCAAAAGGAAATTGAGAAGGAAAGCGGGCTTGAAATCCCTAATATGACAACGTTTATGCAAAGTTTA
ATTAAAATGTATCCGGAAGTGAAAAAGCCATATCGCGGCCAGTACATTTTAGAAGGCGAAATCGCTTCAGACTCTGCTGA
AAATGTGACTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.598

100

0.88