Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   HCU65_RS07855 Genome accession   NZ_CP050705
Coordinates   1529734..1530198 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524734..1535198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS07835 (HCU65_07855) - 1525182..1527002 (+) 1821 WP_003327278.1 PAS domain-containing protein -
  HCU65_RS07840 (HCU65_07860) - 1527025..1528194 (-) 1170 WP_219947547.1 aminotransferase A -
  HCU65_RS07845 (HCU65_07865) - 1528400..1528561 (-) 162 WP_003327276.1 hypothetical protein -
  HCU65_RS07850 (HCU65_07870) cheV 1528770..1529681 (+) 912 WP_003327275.1 chemotaxis protein CheV -
  HCU65_RS07855 (HCU65_07875) kre 1529734..1530198 (-) 465 WP_003327274.1 YkyB family protein Regulator
  HCU65_RS07860 (HCU65_07880) - 1530321..1531616 (-) 1296 WP_010788458.1 MFS transporter -
  HCU65_RS07865 (HCU65_07885) - 1531692..1532189 (-) 498 WP_087941879.1 L,D-transpeptidase family protein -
  HCU65_RS07870 (HCU65_07890) - 1532325..1533185 (-) 861 WP_106034176.1 metallophosphoesterase -
  HCU65_RS07875 (HCU65_07895) fadH 1533331..1534095 (+) 765 WP_003327269.1 2,4-dienoyl-CoA reductase -
  HCU65_RS21365 - 1534171..1534305 (+) 135 Protein_1522 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=434115 HCU65_RS07855 WP_003327274.1 1529734..1530198(-) (kre) [Bacillus atrophaeus strain PENSV20]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=434115 HCU65_RS07855 WP_003327274.1 1529734..1530198(-) (kre) [Bacillus atrophaeus strain PENSV20]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTGGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942