Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HCU65_RS01935 Genome accession   NZ_CP050705
Coordinates   374037..374474 (-) Length   145 a.a.
NCBI ID   WP_219947037.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 369037..379474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS01900 (HCU65_01900) - 369611..370066 (+) 456 WP_219947036.1 RDD family protein -
  HCU65_RS01905 (HCU65_01905) - 370151..370480 (+) 330 WP_010787600.1 YckD family protein -
  HCU65_RS01910 (HCU65_01910) - 370584..371009 (+) 426 WP_010787601.1 MarR family winged helix-turn-helix transcriptional regulator -
  HCU65_RS01915 (HCU65_01915) - 370997..371338 (+) 342 WP_094231349.1 DUF3147 family protein -
  HCU65_RS01920 (HCU65_01920) - 371358..372077 (+) 720 WP_003328073.1 AAA family ATPase -
  HCU65_RS01925 (HCU65_01925) - 372147..373583 (+) 1437 WP_088116477.1 glycoside hydrolase family 1 protein -
  HCU65_RS01930 (HCU65_01930) nin/comJ 373620..374018 (-) 399 WP_003328075.1 competence protein ComJ Regulator
  HCU65_RS01935 (HCU65_01935) nucA/comI 374037..374474 (-) 438 WP_219947037.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HCU65_RS21290 - 374696..375646 (-) 951 WP_371176569.1 methyl-accepting chemotaxis protein -
  HCU65_RS21295 - 375857..376399 (-) 543 Protein_350 cache domain-containing protein -
  HCU65_RS01945 (HCU65_01945) hxlB 376529..377086 (-) 558 WP_219947039.1 6-phospho-3-hexuloisomerase -
  HCU65_RS01950 (HCU65_01950) hxlA 377093..377725 (-) 633 WP_003328079.1 3-hexulose-6-phosphate synthase -
  HCU65_RS01955 (HCU65_01955) - 377944..378309 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15917.75 Da        Isoelectric Point: 4.2345

>NTDB_id=434092 HCU65_RS01935 WP_219947037.1 374037..374474(-) (nucA/comI) [Bacillus atrophaeus strain PENSV20]
MDLLKSLLLILVIIAAAIAGLVKGDFFSVNQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEARR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=434092 HCU65_RS01935 WP_219947037.1 374037..374474(-) (nucA/comI) [Bacillus atrophaeus strain PENSV20]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGTAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGCACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

81.944

99.31

0.814