Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HCU65_RS00245 Genome accession   NZ_CP050705
Coordinates   44536..44826 (-) Length   96 a.a.
NCBI ID   WP_087941801.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39536..49826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS00205 (HCU65_00205) darA 39554..39883 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  HCU65_RS00210 (HCU65_00210) - 39896..40336 (+) 441 WP_003328605.1 YaaR family protein -
  HCU65_RS00215 (HCU65_00215) holB 40348..41337 (+) 990 WP_010787388.1 DNA polymerase III subunit delta' -
  HCU65_RS00220 (HCU65_00220) ricT 41340..42167 (+) 828 WP_003328602.1 competence/sporulation regulator complex protein RicT -
  HCU65_RS00225 (HCU65_00225) yabA 42182..42541 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  HCU65_RS00230 (HCU65_00230) - 42602..43345 (+) 744 WP_003328600.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HCU65_RS00235 (HCU65_00235) - 43332..43631 (+) 300 WP_003328599.1 GIY-YIG nuclease family protein -
  HCU65_RS00240 (HCU65_00240) rsmI 43606..44484 (+) 879 WP_034717636.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HCU65_RS00245 (HCU65_00245) abrB 44536..44826 (-) 291 WP_087941801.1 transition state genes transcriptional regulator AbrB Regulator
  HCU65_RS00250 (HCU65_00250) metG 45313..47307 (+) 1995 WP_219946941.1 methionine--tRNA ligase -
  HCU65_RS00255 (HCU65_00255) - 47386..48153 (+) 768 WP_010787391.1 TatD family hydrolase -
  HCU65_RS00260 (HCU65_00260) - 48311..49636 (+) 1326 WP_219946942.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10801.62 Da        Isoelectric Point: 6.3482

>NTDB_id=434087 HCU65_RS00245 WP_087941801.1 44536..44826(-) (abrB) [Bacillus atrophaeus strain PENSV20]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=434087 HCU65_RS00245 WP_087941801.1 44536..44826(-) (abrB) [Bacillus atrophaeus strain PENSV20]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAGGCGGCAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958