Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KU884_RS17515 Genome accession   NZ_CP050695
Coordinates   3693253..3694257 (-) Length   334 a.a.
NCBI ID   WP_167783820.1    Uniprot ID   A0A6H0IZY5
Organism   Aquisalimonas sp. 2447     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3688253..3699257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU884_RS17490 (HC341_17415) radC 3689283..3689957 (+) 675 WP_167783816.1 DNA repair protein RadC -
  KU884_RS17495 (HC341_17420) - 3689989..3690222 (+) 234 WP_167783817.1 hypothetical protein -
  KU884_RS17500 (HC341_17425) rpoH 3690505..3691374 (-) 870 WP_167783818.1 RNA polymerase sigma factor RpoH -
  KU884_RS17505 (HC341_17430) ftsX 3691586..3692548 (-) 963 WP_254432107.1 permease-like cell division protein FtsX -
  KU884_RS17510 (HC341_17435) ftsE 3692552..3693223 (-) 672 WP_167783819.1 cell division ATP-binding protein FtsE -
  KU884_RS17515 (HC341_17440) pilA 3693253..3694257 (-) 1005 WP_167783820.1 signal recognition particle-docking protein FtsY Machinery gene
  KU884_RS17520 (HC341_17445) - 3694443..3695840 (+) 1398 WP_254432108.1 pitrilysin family protein -
  KU884_RS17525 (HC341_17450) - 3695850..3697226 (+) 1377 WP_254432109.1 pitrilysin family protein -
  KU884_RS17530 (HC341_17455) rsmD 3697245..3697829 (+) 585 WP_167783821.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KU884_RS17535 (HC341_17460) coaD 3697899..3698387 (+) 489 WP_167783822.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36048.92 Da        Isoelectric Point: 5.2974

>NTDB_id=434052 KU884_RS17515 WP_167783820.1 3693253..3694257(-) (pilA) [Aquisalimonas sp. 2447]
MFGFRKNKQGDDARPDSGETEAAAKPGLFGRLRERLGKTRSGLTEGLANAFLGRKTIDDDLLEELETRLLMADVGVEATT
RIIESMTERVRRKELTDLDALMQALREDMIGVLAPCEAPLVPEHDGGPFVLLTVGVNGAGKTTTIGKLASRYREEGRSVL
LAAGDTFRAAAVEQLQQWGERTGIPVIAQHTGADSASVIYDAHQAAQARGVDVLIADTAGRLHTQGNLMEELRKVRRVLG
RLDETAPHEVLLVLDASTGQNALSQAQHFHDAVGVSGIILTKLDGTAKGGVIFAIAHRLGLPIRYVGVGERPEDLRPFHA
EEFVDALLGEALEQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=434052 KU884_RS17515 WP_167783820.1 3693253..3694257(-) (pilA) [Aquisalimonas sp. 2447]
ATGTTCGGGTTCAGAAAGAATAAACAGGGCGACGACGCGCGCCCTGACTCCGGGGAGACCGAGGCGGCGGCGAAGCCGGG
CCTGTTCGGGCGTCTGCGCGAGCGCCTGGGCAAGACCCGCTCCGGACTCACCGAGGGGCTGGCCAATGCCTTTCTCGGCC
GCAAGACCATCGACGATGACCTGCTGGAGGAGCTGGAGACGCGGCTGCTCATGGCAGACGTCGGTGTGGAAGCGACCACC
CGCATCATCGAGAGCATGACCGAGCGTGTCCGCCGCAAGGAGCTGACGGACCTGGATGCGCTCATGCAGGCCCTGCGCGA
GGACATGATCGGCGTGCTGGCCCCCTGCGAAGCGCCACTGGTGCCGGAACATGACGGCGGACCCTTCGTGCTGCTCACCG
TTGGCGTCAACGGCGCCGGCAAGACCACCACCATTGGCAAGCTGGCCAGCCGCTACCGCGAGGAAGGCCGCTCCGTGCTG
CTCGCCGCCGGTGACACCTTCCGTGCCGCCGCCGTGGAACAGCTCCAGCAGTGGGGCGAGCGCACCGGTATCCCGGTGAT
CGCCCAGCACACCGGTGCCGATTCCGCCTCGGTGATCTATGACGCCCATCAGGCCGCCCAGGCCCGCGGGGTGGACGTGC
TCATCGCCGATACCGCCGGGCGGCTGCACACCCAGGGCAATCTCATGGAGGAGCTGCGCAAGGTCCGTCGTGTTCTGGGT
CGCCTGGACGAGACAGCGCCCCACGAAGTCCTGCTGGTGCTGGACGCCAGTACCGGCCAGAACGCGCTGTCCCAGGCCCA
GCACTTCCACGACGCCGTGGGTGTGTCCGGCATCATCCTCACCAAGCTCGATGGCACCGCCAAGGGCGGGGTCATCTTCG
CCATCGCCCACCGGCTTGGCCTGCCCATCCGTTACGTCGGCGTCGGCGAGCGGCCGGAGGACCTGCGGCCGTTCCACGCC
GAAGAGTTCGTGGATGCCCTGCTGGGCGAGGCGCTGGAGCAGTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(129-329)

SRP54-type protein, helical bundle domain (SRP54_N)

(43-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0IZY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.618

91.018

0.488