Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PADK2_RS08685 Genome accession   NC_018080
Coordinates   1864757..1865086 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa DK2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1859757..1870086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PADK2_RS08670 (PADK2_08610) - 1860049..1861254 (+) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  PADK2_RS08675 - 1861447..1862474 (+) 1028 Protein_1732 MraY family glycosyltransferase -
  PADK2_RS08680 (PADK2_08625) - 1862569..1864566 (+) 1998 WP_003143571.1 polysaccharide biosynthesis protein -
  PADK2_RS08685 (PADK2_08630) comEA/comE1 1864757..1865086 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  PADK2_RS08695 (PADK2_08635) - 1865303..1866499 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PADK2_RS08700 (PADK2_08640) uvrB 1866687..1868699 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=43402 PADK2_RS08685 WP_003104586.1 1864757..1865086(+) (comEA/comE1) [Pseudomonas aeruginosa DK2]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=43402 PADK2_RS08685 WP_003104586.1 1864757..1865086(+) (comEA/comE1) [Pseudomonas aeruginosa DK2]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment