Detailed information NTG0043397

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PADK2_RS06295
• Genome accession: NC_018080
• Coordinates: 1348417..1349421 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa DK2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1343417..1354421

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PADK2_RS06265 (PADK2_06200)	fghA	1343509..1344360 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
PADK2_RS06270 (PADK2_06205)	ispF	1344431..1344904 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PADK2_RS06275 (PADK2_06210)	truD	1344901..1345968 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
PADK2_RS06280 (PADK2_06215)	surE	1345956..1346705 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PADK2_RS06285 (PADK2_06220)	-	1346738..1347373 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PADK2_RS06290	-	1347419..1348312 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PADK2_RS06295 (PADK2_06230)	rpoS	1348417..1349421 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PADK2_RS06300 (PADK2_06235)	fdxA	1349848..1350171 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PADK2_RS06305 (PADK2_06240)	mutS	1350238..1352805 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PADK2_RS06310 (PADK2_06245)	-	1352931..1353938 (-)	1008	WP_003117491.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=43397 PADK2_RS06295 WP_003113871.1 1348417..1349421(+) (rpoS) [Pseudomonas aeruginosa DK2]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=43397 PADK2_RS06295 WP_003113871.1 1348417..1349421(+) (rpoS) [Pseudomonas aeruginosa DK2]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATTGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653