Detailed information NTG0433906

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ILQ31_RS05520
• Genome accession: NZ_CP062774
• Coordinates: 1138683..1139675 (+)
• Length: 330 a.a.
• NCBI ID: WP_139498548.1
• Uniprot ID: -
• Organism: Escherichia coli O157:H7 strain Z563
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1133683..1144675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ILQ31_RS05490 (ILQ31_05490)	ispD	1133744..1134454 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ILQ31_RS05495 (ILQ31_05495)	ispF	1134454..1134933 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ILQ31_RS05500 (ILQ31_05500)	truD	1134930..1135979 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
ILQ31_RS05505 (ILQ31_05505)	surE	1135960..1136721 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ILQ31_RS05510 (ILQ31_05510)	pcm	1136715..1137341 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ILQ31_RS05515 (ILQ31_05515)	nlpD	1137526..1138620 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
ILQ31_RS05520 (ILQ31_05520)	rpoS	1138683..1139675 (+)	993	WP_139498548.1	RNA polymerase sigma factor RpoS	Regulator
ILQ31_RS05525 (ILQ31_05525)	-	1139795..1140202 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
ILQ31_RS05530 (ILQ31_05530)	-	1140349..1140942 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ILQ31_RS05535 (ILQ31_05535)	-	1140942..1142369 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ILQ31_RS05540 (ILQ31_05540)	-	1142380..1142616 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ILQ31_RS05545 (ILQ31_05545)	pphB	1142657..1143313 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37946.76 Da
• Isoelectric Point: 4.5597

>NTDB_id=433906 ILQ31_RS05520 WP_139498548.1 1138683..1139675(+) (rpoS) [Escherichia coli O157:H7 strain Z563]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMSESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=433906 ILQ31_RS05520 WP_139498548.1 1138683..1139675(+) (rpoS) [Escherichia coli O157:H7 strain Z563]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGAGCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (96-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712