Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HC353_RS11260 Genome accession   NZ_CP050648
Coordinates   2320931..2322613 (-) Length   560 a.a.
NCBI ID   WP_002329022.1    Uniprot ID   A0AAJ1SPN5
Organism   Enterococcus faecium strain BIOPOP-3 ALE     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315931..2327613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC353_RS11230 (HC353_11230) ftsL 2317204..2317605 (-) 402 WP_167779415.1 cell division protein FtsL -
  HC353_RS11235 (HC353_11235) rsmH 2317610..2318569 (-) 960 WP_167779416.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  HC353_RS11240 (HC353_11240) mraZ 2318590..2319021 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  HC353_RS11245 (HC353_11245) - 2319191..2319559 (-) 369 WP_002291871.1 DUF3397 domain-containing protein -
  HC353_RS11250 (HC353_11250) - 2319730..2320686 (+) 957 WP_002291874.1 magnesium transporter CorA family protein -
  HC353_RS11255 (HC353_11255) - 2320759..2320875 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  HC353_RS11260 (HC353_11260) recN 2320931..2322613 (-) 1683 WP_002329022.1 DNA repair protein RecN Machinery gene
  HC353_RS11265 (HC353_11265) - 2322631..2323080 (-) 450 WP_002291879.1 ArgR family transcriptional regulator -
  HC353_RS11270 (HC353_11270) - 2323187..2324005 (-) 819 WP_002291881.1 TlyA family RNA methyltransferase -
  HC353_RS11275 (HC353_11275) - 2324014..2324904 (-) 891 WP_002329021.1 polyprenyl synthetase family protein -
  HC353_RS11280 (HC353_11280) - 2324906..2325130 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  HC353_RS11285 (HC353_11285) xseA 2325135..2326472 (-) 1338 WP_002291885.1 exodeoxyribonuclease VII large subunit -
  HC353_RS11290 (HC353_11290) - 2326473..2327327 (-) 855 WP_002329020.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63394.79 Da        Isoelectric Point: 4.5791

>NTDB_id=433864 HC353_RS11260 WP_002329022.1 2320931..2322613(-) (recN) [Enterococcus faecium strain BIOPOP-3 ALE]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDMEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDENRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLARRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=433864 HC353_RS11260 WP_002329022.1 2320931..2322613(-) (recN) [Enterococcus faecium strain BIOPOP-3 ALE]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCTTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATTGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGACGAGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCACATCATCACGCTAGCTAATCTAAGGAAAATCGGCAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGCGTTGGCTTGGCCGTTGCAGAATTGCAAGGGATCGCACATCTAGATATGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGTTACAAGATGCAATCGGAGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAACCGTTTAGAAGAAGTGACTCAACGTCTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTCGATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAGCCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGTGGCGAATTATCTCGGATGTTACTGGCTTTGAAAACGATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTACCGCAAGTCGCCGCAGTCGCCGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACTTCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGCATGCTAGCTGGAAGTGAGATTACAAAACTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAGAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.298

100

0.502