Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G6008_RS06155 Genome accession   NZ_CP050646
Coordinates   1224872..1225501 (-) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   A0A8S7S1H1
Organism   Escherichia coli strain PapM-36-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219872..1230501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6008_RS06140 (G6008_06140) helD 1220114..1222168 (-) 2055 WP_000420533.1 DNA helicase IV -
  G6008_RS06145 (G6008_06145) yccF 1222291..1222737 (+) 447 WP_001261231.1 YccF domain-containing protein -
  G6008_RS06150 (G6008_06150) yccS 1222747..1224909 (+) 2163 WP_000875020.1 YccS family putative transporter -
  G6008_RS06155 (G6008_06155) sxy/tfoX 1224872..1225501 (-) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G6008_RS06160 (G6008_06160) sulA 1225720..1226229 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G6008_RS06165 (G6008_06165) ompA 1226586..1227626 (+) 1041 WP_000750416.1 porin OmpA -
  G6008_RS06170 (G6008_06170) matP 1227702..1228154 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G6008_RS06175 (G6008_06175) ycbZ 1228340..1230100 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=433815 G6008_RS06155 WP_000699018.1 1224872..1225501(-) (sxy/tfoX) [Escherichia coli strain PapM-36-2]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=433815 G6008_RS06155 WP_000699018.1 1224872..1225501(-) (sxy/tfoX) [Escherichia coli strain PapM-36-2]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995