Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | HCN55_RS13850 | Genome accession | NZ_CP050532 |
| Coordinates | 2645689..2646099 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis subsp. subtilis str. SMY | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2646295..2696408 | 2645689..2646099 | flank | 196 |
Gene organization within MGE regions
Location: 2645689..2696408
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCN55_RS13850 (HCN55_13855) | nucA/comI | 2645689..2646099 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| HCN55_RS13855 (HCN55_13860) | - | 2646295..2646642 (+) | 348 | Protein_2692 | sigma-70 family RNA polymerase sigma factor | - |
| HCN55_RS13860 (HCN55_13865) | spoIVCA | 2646673..2648133 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| HCN55_RS22135 | - | 2648091..2648269 (-) | 179 | Protein_2694 | hypothetical protein | - |
| HCN55_RS13865 (HCN55_13870) | arsC | 2648624..2649043 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| HCN55_RS13870 (HCN55_13875) | acr3 | 2649055..2650095 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| HCN55_RS13875 (HCN55_13880) | arsK | 2650118..2650558 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| HCN55_RS13880 (HCN55_13885) | arsR | 2650619..2650936 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| HCN55_RS13885 (HCN55_13890) | yqcI | 2651308..2652072 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| HCN55_RS13890 (HCN55_13895) | rapE | 2652515..2653642 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| HCN55_RS13895 (HCN55_13900) | phrE | 2653632..2653766 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| HCN55_RS13900 (HCN55_13905) | - | 2653876..2654034 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| HCN55_RS13905 (HCN55_13910) | yqcG | 2654404..2655999 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| HCN55_RS13910 (HCN55_13915) | yqcF | 2656014..2656592 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| HCN55_RS13915 (HCN55_13920) | - | 2656710..2656856 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| HCN55_RS13920 (HCN55_13925) | - | 2656853..2657215 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| HCN55_RS13925 (HCN55_13930) | - | 2657231..2657710 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| HCN55_RS13930 (HCN55_13935) | cwlA | 2657875..2658693 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| HCN55_RS13935 (HCN55_13940) | skhD | 2658738..2659160 (-) | 423 | WP_003246208.1 | holin family protein | - |
| HCN55_RS13940 (HCN55_13945) | xepAK | 2659205..2660098 (-) | 894 | WP_003246010.1 | hypothetical protein | - |
| HCN55_RS13945 (HCN55_13950) | yqcE | 2660186..2660350 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| HCN55_RS13950 (HCN55_13955) | yqcD | 2660347..2660682 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| HCN55_RS13955 (HCN55_13960) | yqcC | 2660692..2661792 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| HCN55_RS13960 (HCN55_13965) | - | 2661795..2662067 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| HCN55_RS13965 (HCN55_13970) | yqcA | 2662064..2662642 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| HCN55_RS13970 (HCN55_13975) | yqbT | 2662626..2663672 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| HCN55_RS13975 (HCN55_13980) | yqbS | 2663665..2664090 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| HCN55_RS13980 (HCN55_13985) | yqbR | 2664103..2664366 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| HCN55_RS13985 (HCN55_13990) | yqbQ | 2664363..2665343 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| HCN55_RS13990 (HCN55_13995) | yqbP | 2665356..2666015 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| HCN55_RS13995 (HCN55_14000) | yqbO | 2666008..2670765 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| HCN55_RS14000 (HCN55_14005) | - | 2670768..2670905 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| HCN55_RS14005 (HCN55_14010) | - | 2670947..2671396 (-) | 450 | WP_003229933.1 | phage portal protein | - |
| HCN55_RS14010 (HCN55_14015) | txpA | 2671543..2671723 (+) | 181 | Protein_2724 | type I toxin-antitoxin system toxin TxpA | - |
| HCN55_RS14015 (HCN55_14020) | bsrH | 2672103..2672192 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| HCN55_RS14020 (HCN55_14025) | yqbM | 2672446..2672889 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| HCN55_RS14025 (HCN55_14030) | yqbK | 2672892..2674292 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| HCN55_RS14030 (HCN55_14035) | - | 2674293..2674484 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| HCN55_RS14035 (HCN55_14040) | yqbJ | 2674481..2674918 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| HCN55_RS14040 (HCN55_14045) | yqbI | 2674931..2675434 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| HCN55_RS14045 (HCN55_14050) | yqbH | 2675431..2675793 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| HCN55_RS14050 (HCN55_14055) | gkpG | 2675790..2676185 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| HCN55_RS14055 (HCN55_14060) | yqbF | 2676189..2676500 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| HCN55_RS14060 (HCN55_14065) | skdG | 2676511..2677446 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| HCN55_RS14065 (HCN55_14070) | yqbD | 2677465..2678433 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| HCN55_RS14070 (HCN55_14075) | - | 2678466..2679119 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| HCN55_RS14075 (HCN55_14080) | yqbB | 2679160..2680077 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| HCN55_RS14080 (HCN55_14085) | yqbA | 2680074..2681606 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| HCN55_RS14085 (HCN55_14090) | stmB | 2681610..2682905 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| HCN55_RS14090 (HCN55_14095) | terS | 2682898..2683617 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| HCN55_RS14095 (HCN55_14100) | - | 2683685..2684149 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| HCN55_RS14100 (HCN55_14105) | yqaQ | 2684293..2684748 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| HCN55_RS14105 (HCN55_14110) | - | 2684946..2685875 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| HCN55_RS14110 (HCN55_14115) | yqaO | 2685949..2686155 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| HCN55_RS14115 (HCN55_14120) | yqaN | 2686237..2686665 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HCN55_RS14120 (HCN55_14125) | - | 2686761..2686910 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| HCN55_RS14125 (HCN55_14130) | sknM | 2686901..2687842 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| HCN55_RS14130 (HCN55_14135) | yqaL | 2687724..2688401 (-) | 678 | WP_010886575.1 | DnaD domain protein | - |
| HCN55_RS14135 (HCN55_14140) | recT | 2688477..2689331 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| HCN55_RS14140 (HCN55_14145) | yqaJ | 2689334..2690293 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| HCN55_RS14145 (HCN55_14150) | - | 2690399..2690593 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| HCN55_RS14150 (HCN55_14155) | - | 2690553..2690726 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| HCN55_RS14155 (HCN55_14160) | sknH | 2690723..2690980 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| HCN55_RS14160 (HCN55_14165) | yqaG | 2690977..2691546 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| HCN55_RS14165 (HCN55_14170) | - | 2691620..2691760 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| HCN55_RS14170 (HCN55_14175) | yqaF | 2691790..2692020 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| HCN55_RS14175 (HCN55_14180) | sknR | 2692197..2692547 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
| HCN55_RS14180 (HCN55_14185) | - | 2692814..2692981 (-) | 168 | WP_003229900.1 | hypothetical protein | - |
| HCN55_RS14185 (HCN55_14190) | yqaC | 2693337..2693873 (-) | 537 | WP_004399117.1 | AAA family ATPase | - |
| HCN55_RS14190 (HCN55_14195) | yqaB | 2694142..2694660 (+) | 519 | WP_004399097.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HCN55_RS14195 (HCN55_14200) | - | 2694666..2695058 (+) | 393 | Protein_2761 | sigma-70 family RNA polymerase sigma factor | - |
| HCN55_RS14200 (HCN55_14205) | - | 2695058..2695174 (+) | 117 | WP_003229898.1 | hypothetical protein | - |
| HCN55_RS14205 (HCN55_14210) | - | 2695140..2695340 (-) | 201 | Protein_2763 | recombinase family protein | - |
| HCN55_RS14210 (HCN55_14215) | - | 2695283..2695447 (-) | 165 | WP_010886576.1 | hypothetical protein | - |
| HCN55_RS14215 (HCN55_14220) | psiE | 2695992..2696408 (-) | 417 | WP_003246154.1 | phosphate-starvation-inducible protein PsiE | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=433757 HCN55_RS13850 WP_009967785.1 2645689..2646099(-) (nucA/comI) [Bacillus subtilis subsp. subtilis str. SMY]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=433757 HCN55_RS13850 WP_009967785.1 2645689..2646099(-) (nucA/comI) [Bacillus subtilis subsp. subtilis str. SMY]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |